Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1211 ATGCAGAAAAACACAAACACAAACCCCATTTTCACCACCTCCACCAGGCGCTCAAAGATGAGATCTTGCACCAATTCCCTTTGTTTCTTTTGCCTAATGAAAGAAACCCACTCACCAACAAGAAGAGCCGGATTAAAGAAATGCTTCAATGAGCTACCTTACAGCGACCACCGCGACGACCACGACCATGTCCTTGTCCTTAGTGCACTTTGGCACATAGCCATGGCTCAGCCAAATGACAGAGAGTACCCTTCTCTTGGTGTGTTCCAATGCATGGGAAGCTTGATCCAAAGGGGCGTAAAGGACAAAACTTGGCTTCTGAGGGACCAAAATATCTACATCCCATATTATGCAGGCCATGTGATTGGGTCTTACACAATGCACAAGGCTGAGTTTGCAGAGAAAGCAGCTGAGTCAGGAGTGATTCCACCATTAATGGAGCTTTTGAGAGGAAAAATGAGCTGGGTTGAGCAAAGAGTCAGTGTTCGAGCACTCGGTCACCTCGCTAGCTACAACTCAACTTTTGAAGCCCTTGTTCCATATCAAGAGGAGATTGTCAAATCAGCCATGGAGATTGCATCCTCTTGCCTTGATATAGTGTATGAAGATTTTGTAACAAAAAGTGAAGAGAAGAGAGAGAAATACCATAGAGATTTGCTCACAAGAGGTGTTGGTGGGAGAGAGATAGAAGATAGAAAAGCAGAGGAATGGAGCAGCCAACTTCAATGTTGGTGTCTTCATTTGGTAAAGTGCTTTGCTTCCAAAGGGAGATGTTTGAATCTCATTTGCAACAACTCAATTTTCTTAAGGAAATTATGTGGAATGTGGGGTGGATTGTCAAATTACACCTCAACTGGTGGAATTGGACTCATAAGAATCTTGAGTTACAACAAATTTTCAAGGAAATACATAGCTGAATCCACAGAAATCATTGACACCCTTTGCAACTTGTCTAGATCTTCAGATGACTGGCAATACATTGGCATTGAATGTCTCTTACTCCTGCTCAAAGACCCACAAACGAGGTACAACGTTATTGAAATAGCAGCCTTTTGTCTCATAGATTTGGTAGAAATCAAAACACTTGGAGACAAAAAAAATGTAGGGGAAGCCATCACACAAGCTCTTCTATCAGATTACAATTACCAAATCACAAAAAAGAAAGAATTAAATGATCTCCAAAGGGTATTAAGAGAAACATGGGAATTGAAAGTGGAGAGGAAAAGGAAAGAGAAATTGGTGTGTGAGGAGAAGCTTGAAGAGAAAAGGGGATTGGTGAATCTCATAAAACAACAAGCAAATGAGCTATTTAGATTGGGAGAAACTGAGGGAGCTTTAGGAAAATACAAACAAGGGTTGGATTTGTGTCCATTGAAGTTTAGAAAAGAGAGAATGGTGCTTCATAGCAACAAAGCACAATGCCATTTGCTGTTGAGGGATCCGGATGCAGCCATTAGTGACTCGACTCGAGCTTTGTGTTACTCAAGTCCAACAAATTCTCACACTAAGAGCTTGTGGAGAAGATCACAGGCTTATGACATGAAAGGGTTGCCAAAAGAGAGCTTGATGGACTGTATAATGTTTGTCAATATTGGATTCAAAGTTGATCAAGGAAATGGATTAATGGGTGATAATAAGAGAATCAAGATCCCATATCATGCAGCTAGAATGATTAGCAAGCAAATGGAGGAAACTTGGCTTTTTGCATCAGCTAGATTAAAGAAATTGCGTTCAAATGAAGTGAGAAAAAAGGCTGAAGATTCTTCTAAGCACAGTCATGAGGGCCATGGAATGATGATGAGGAAGATGACCATATAA 1818 40.92 MQKNTNTNPIFTTSTRRSKMRSCTNSLCFFCLMKETHSPTRRAGLKKCFNELPYSDHRDDHDHVLVLSALWHIAMAQPNDREYPSLGVFQCMGSLIQRGVKDKTWLLRDQNIYIPYYAGHVIGSYTMHKAEFAEKAAESGVIPPLMELLRGKMSWVEQRVSVRALGHLASYNSTFEALVPYQEEIVKSAMEIASSCLDIVYEDFVTKSEEKREKYHRDLLTRGVGGREIEDRKAEEWSSQLQCWCLHLVKCFASKGRCLNLICNNSIFLRKLCGMWGGLSNYTSTGGIGLIRILSYNKFSRKYIAESTEIIDTLCNLSRSSDDWQYIGIECLLLLLKDPQTRYNVIEIAAFCLIDLVEIKTLGDKKNVGEAITQALLSDYNYQITKKKELNDLQRVLRETWELKVERKRKEKLVCEEKLEEKRGLVNLIKQQANELFRLGETEGALGKYKQGLDLCPLKFRKERMVLHSNKAQCHLLLRDPDAAISDSTRALCYSSPTNSHTKSLWRRSQAYDMKGLPKESLMDCIMFVNIGFKVDQGNGLMGDNKRIKIPYHAARMISKQMEETWLFASARLKKLRSNEVRKKAEDSSKHSHEGHGMMMRKMTI 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25176921 25178937 - Sed0011842.1 Sed10g1211 727715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1211 605 SUPERFAMILY TPR-like 416 528 IPR011990 GO:0005515(InterPro)
Sed10g1211 605 Gene3D - 55 429 IPR011989 -
Sed10g1211 605 Gene3D Tetratricopeptide repeat domain 430 534 IPR011990 GO:0005515(InterPro)
Sed10g1211 605 MobiDBLite consensus disorder prediction 579 605 - -
Sed10g1211 605 MobiDBLite consensus disorder prediction 579 598 - -
Sed10g1211 605 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 20 591 - -
Sed10g1211 605 SUPERFAMILY ARM repeat 63 363 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1211 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1211 Sed-Chr10:25176921 Sed14g1037 Sed-Chr14:19953017 4.60E-145 dispersed
Sed10g0685 Sed-Chr10:4774017 Sed10g1211 Sed-Chr10:25176921 2.10E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g679 . . . . . . . . Cmo05g00153 . . . . . Sed10g1211 . . Bhi04g00400 Tan02g1762 Cmetu03g0353 . Hepe08g1319 . Lcy13g2122 Cla08g01608 Cam08g2109 Cec08g1694 Cco08g1818 Clacu08g1794 . Cre08g1577 . . Cone17ag0873 Cone20ag0221 . . . Cme03g02087 . . . . . . . . . . . Cma12g00585 Cma05g00153 Car05g00133 . Cpe11g00129 . . . . . . . . . . . . . . . Lsi08g01512 Csa02g01908 Chy03g01578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013300 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27