Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1217 ATGATGTTAATATTATTATCTCTACTTGGAAAAATCTTTTCTTTGCTTTCATTCAAATCTCGACTCGACGTAACATCGGTAAGCTCTCTGTCTTCTTGGGACCCAACTTCATCACCCTGCAACTGGACTGGCATCAGCTGCAGCCTACATGGCAGCAGCATCAGAGTAGTTGAACTTCATCTTCCTCGATTCGGACTGTCGGGCTCAATCGATCCTCACGTTGGAAACCTGTCCTTCCTTCAATCTCTTCAACTTCAAAACAACCAATTCAGAGGATCCATACCGGAGGAAATCAGTAATCTTTGGCACCTGCGGGTTGTAAAGATGAGCTCCAACCAGTTAGAAGGGGGGCTTCCTTTCAACTTCACTGCAACGTCTGAACTTGAGATTCTTGACTTGGAATCCAATGAAATCACAGGCCGGCTTCCTGAAGAGATGGGTCTTTTAACCAAGCTTCGAGTCTTGAACTTGGCACGAAATCGACTTTACGGCACAATTCCAGCCTCCATTGGGAACATGTCTTCTCTAATTACCATGAACTTAGGGACCAACTCTCTGAGTGGATCCATTCCCAACCAAGTGGCCAACCTCCGAAATCTCAAGCATCTTATGCTCCCTGTCAATGATCTCTCTGGCCTGCTTCCACCCAATGTGTTCAACATGTCATCCTTAGTCACCATGGCCTTAGGTTCAAACGAACTCCAAGGAACGCTTCCGGACGACATGGGAGACAAACTCTCAAATCTTTTAGTCTTCTACATCTGCTTCAATCAATTTACTGGAACAATCCCTCGCTCAATCCACAACATCACAAAAATTCAAGTCATACGCATGGCTCATAATTCTCTTCATGGACCACTGCCACCAGGTTTGGAAACACTCCTTGAACTATCAATGTACAATATTCGCTCAAACAGATTCGTCAGCGTGGGTGAAAATGGACTTAGTTTCATAGCGTCTCTGACAAACAGCTCGCATCTCAACTACCTGAGAGTTGATGATAATGAGTTTGAGGGTCTAATTCCAGAAGCTATTGGAAATCTGTCAAAGGATCTTTCGATTTTGAACATGGGAAGGAATCGTATATATGGCAATATACCTACCTCTATTGCTAATTTGCATGGCTTGTCTTTGCTGAACTTGAGCGACAACTCATTATCAGGTGAAATTCCATCTGTAATAGGGAAGTTAGAAAATCTACAAGTTCTTGGTTTGGCCAAGAATCGATTCATCGGTAACATCCCAACCTCCCTTGGAAACCTTCAAAGGTTGATTCAAATCAACTTATCAGGAAACAAATTGGTTGGGAACATACCAACTTCTTTTGGCAGCTTTGTGAATCTGTTCTCGTTGGACTTGTCCAGCAATCAACTCGATGGAAGTATACCAATACAGACACTGACTTTGCCCGGTTTAAGCAAGCTTTTAAATCTATCAAACAATCTTTTCAGTGGGTTTTTGCCTAAAGAAATTGGGTCACTTGAAAATGTTGCAACCATCGATATCTCCAATAACCATATCTTTGGTAGTATTCCAACTTCAATTAGTGGTTGCATAAAATTAGAGGTATTGATAATGGCAAGAAATGAATTCTCGGGTCCCATTCCAAGAGTGTTGAGCGATCTTAGAGGCCTCCAACGTCTTGATCTATCCTCGAACAATCTTTCAGGATCCGTTCCTAATGAGCTTCAGAATATAACGGGGCTTCAGTTTTTAAATCTCTCTTTTAATGATCTTGAGGGAGTAGTCCCCAAAGGTGGAGTTTTTCAAAGAATCAACGATATTTATTTAGAAGGAAATCCAAAGCTTTGCTTGCGTTCTTCGTGTCTGGAGGGTGGATCTAATCGTGCCAAAGTAATTAAAGTTTTCGCCTTCACAGTCGTGTTTTCAACACTGGCACTCTGCTTAATTATTTTTGGTATGCTGATCTATTGTAGGAGGAAAAATTCAAGCATTGGACCATCATCATCGACTGAATCGTTCAAGTGGCAATGTGAAACAGTCTCTTACAATGAGCTCCGCCTGGCAACAGAGAATTTCAGCGAGAAAAATGTGATTGGGAGAGGAAGCTTTGGTTCAGTATACAAGGGAAATATAAAGCAGGGAATTTCTGTGGCTATCAAGGTTCTTGACATCAACAAGACAGGTTCTATAAGGAGCTTTTTGGCAGAATGTGAAGCCTTGCGGAATGTGAGACATCGAAATCTTGTTAGACTCATCACATCGTGCTCCAGCATAGACTTCTCAAACATGGAATTTCGAGCTTTGATTTATGAACTTATGAGCCATGGAAGCTTGAATGAGTGGATTCAAGGCCAAAGAAGCCAGGAAAGTGGAATTGGGCTCAATTTCTTTGAGCGAATGAACATTGCCATTGACATCGCTTCAGCAATAAATTACTTGCACCATGATTGCGAGTTTCCCATAATTCATTGTGACCTAAAGCCAAGCAACATTCTTCTAGATGCAGACATGACTGCAAAAGTAGGAGATTTCGGATTAGCTCGGTTTCTGAGAGAGAGTGAAAACACTCAATCTTCCATCAATTCCACACATTTCCTAGAAGGTTCAATTGGTTACCTTCCTCCAGAGTATGGCTACGGAGTGAAGGCAACAAAAGCAGGAGACATGTACAGTTTCGGAATAACATTGTTAGAACTTTTTACAGGGAAGAATCCAACAGATGAATATTTCACAGGAGAAATGAATGTGGTGAAATGGGTAGAGTTGTGTTTCCCAGAAGATTTGATGGAAGTGATCGATTTCAAGTTGTCAAAACTTAGCGAGGAATTGGAATATGAAAGTGAAATCATAAATTCAGAGGCACAGAAGGATTGTTTGATGAAAACAATGGAAGTTGCACTGTCATGTGTTGTGAACTCTCCATCAAAACGAATTGATATCAAAGATGCTCTTTCAAAGCTAAGAAGCGCCAAAGATAACCTTATTTGTGCTCCAAAGCAAAGGGTTACATGTAGTCGAAAAGAGGTTCATGGTTAG 3000 41.37 MMLILLSLLGKIFSLLSFKSRLDVTSVSSLSSWDPTSSPCNWTGISCSLHGSSIRVVELHLPRFGLSGSIDPHVGNLSFLQSLQLQNNQFRGSIPEEISNLWHLRVVKMSSNQLEGGLPFNFTATSELEILDLESNEITGRLPEEMGLLTKLRVLNLARNRLYGTIPASIGNMSSLITMNLGTNSLSGSIPNQVANLRNLKHLMLPVNDLSGLLPPNVFNMSSLVTMALGSNELQGTLPDDMGDKLSNLLVFYICFNQFTGTIPRSIHNITKIQVIRMAHNSLHGPLPPGLETLLELSMYNIRSNRFVSVGENGLSFIASLTNSSHLNYLRVDDNEFEGLIPEAIGNLSKDLSILNMGRNRIYGNIPTSIANLHGLSLLNLSDNSLSGEIPSVIGKLENLQVLGLAKNRFIGNIPTSLGNLQRLIQINLSGNKLVGNIPTSFGSFVNLFSLDLSSNQLDGSIPIQTLTLPGLSKLLNLSNNLFSGFLPKEIGSLENVATIDISNNHIFGSIPTSISGCIKLEVLIMARNEFSGPIPRVLSDLRGLQRLDLSSNNLSGSVPNELQNITGLQFLNLSFNDLEGVVPKGGVFQRINDIYLEGNPKLCLRSSCLEGGSNRAKVIKVFAFTVVFSTLALCLIIFGMLIYCRRKNSSIGPSSSTESFKWQCETVSYNELRLATENFSEKNVIGRGSFGSVYKGNIKQGISVAIKVLDINKTGSIRSFLAECEALRNVRHRNLVRLITSCSSIDFSNMEFRALIYELMSHGSLNEWIQGQRSQESGIGLNFFERMNIAIDIASAINYLHHDCEFPIIHCDLKPSNILLDADMTAKVGDFGLARFLRESENTQSSINSTHFLEGSIGYLPPEYGYGVKATKAGDMYSFGITLLELFTGKNPTDEYFTGEMNVVKWVELCFPEDLMEVIDFKLSKLSEELEYESEIINSEAQKDCLMKTMEVALSCVVNSPSKRIDIKDALSKLRSAKDNLICAPKQRVTCSRKEVHG 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25440539 25445534 - Sed0002992.1 Sed10g1217 727721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1217 999 Pfam Leucine rich repeat N-terminal domain 14 48 IPR013210 -
Sed10g1217 999 Gene3D Phosphorylase Kinase; domain 1 653 760 - -
Sed10g1217 999 SMART serkin_6 680 983 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1217 999 SMART LRR_typ_2 77 101 IPR003591 -
Sed10g1217 999 SMART LRR_typ_2 566 591 IPR003591 -
Sed10g1217 999 SMART LRR_typ_2 373 397 IPR003591 -
Sed10g1217 999 SMART LRR_typ_2 445 469 IPR003591 -
Sed10g1217 999 SMART LRR_typ_2 197 221 IPR003591 -
Sed10g1217 999 SMART LRR_typ_2 149 173 IPR003591 -
Sed10g1217 999 SMART LRR_typ_2 542 565 IPR003591 -
Sed10g1217 999 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 51 314 - -
Sed10g1217 999 SUPERFAMILY Protein kinase-like (PK-like) 655 975 IPR011009 -
Sed10g1217 999 PANTHER OS04G0122200 PROTEIN 28 976 IPR051809 -
Sed10g1217 999 FunFam LRR receptor-like serine/threonine-protein kinase EFR 652 760 - -
Sed10g1217 999 Gene3D Ribonuclease Inhibitor 126 211 IPR032675 -
Sed10g1217 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1217 999 FunFam LRR receptor-like serine/threonine-protein kinase EFR 315 614 - -
Sed10g1217 999 Gene3D Ribonuclease Inhibitor 212 310 IPR032675 -
Sed10g1217 999 Pfam Leucine rich repeat 399 458 IPR001611 GO:0005515(InterPro)
Sed10g1217 999 Pfam Leucine rich repeat 151 210 IPR001611 GO:0005515(InterPro)
Sed10g1217 999 Pfam Leucine rich repeat 520 579 IPR001611 GO:0005515(InterPro)
Sed10g1217 999 ProSitePatterns Protein kinases ATP-binding region signature. 686 708 IPR017441 GO:0005524(InterPro)
Sed10g1217 999 SUPERFAMILY L domain-like 13 307 - -
Sed10g1217 999 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 761 988 - -
Sed10g1217 999 Pfam Protein kinase domain 681 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1217 999 Gene3D Ribonuclease Inhibitor 12 125 IPR032675 -
Sed10g1217 999 Gene3D Transferase(Phosphotransferase) domain 1 761 991 - -
Sed10g1217 999 SUPERFAMILY L domain-like 352 604 - -
Sed10g1217 999 ProSiteProfiles Protein kinase domain profile. 680 983 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1217 999 Gene3D Ribonuclease Inhibitor 311 609 IPR032675 -
Sed10g1217 999 Pfam Leucine Rich Repeat 498 518 IPR001611 GO:0005515(InterPro)
Sed10g1217 999 Pfam Leucine Rich Repeat 128 147 IPR001611 GO:0005515(InterPro)
Sed10g1217 999 Pfam Leucine Rich Repeat 376 397 IPR001611 GO:0005515(InterPro)
Sed10g1217 999 Pfam Leucine Rich Repeat 475 494 IPR001611 GO:0005515(InterPro)
Sed10g1217 999 Pfam Leucine Rich Repeat 326 348 IPR001611 GO:0005515(InterPro)
Sed10g1217 999 Pfam Leucine Rich Repeat 80 101 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1217 Sed-Chr10:25440539 Sed11g2154 Sed-Chr11:35374473 6.10E-09 dispersed
Sed10g1217 Sed-Chr10:25440539 Sed10g1218 Sed-Chr10:25459763 1.10E-15 tandem
Sed10g1217 Sed-Chr10:25440539 Sed11g0928 Sed-Chr11:22969519 5.90E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79849 PF00069 Pkinase 7.40E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1217 - - - 0.0