Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1226 ATGAAGATTCATCAGTTTGCACGTGGCCTTTGGGAGGAACCCTCTCTCTCCCTCGCTTGCAAGCGCTTACGCCCTATTCCCCCAAACGCCCTTAACAATTCACAACATGATCAACCCACCACTCCACCTACTACCTCTACGCTCACTACTTTCGACCTTAAGACCTTCATCCGCCCCGATTCCGCCCCGAGAAAACTCGACTCTTCGGACCATCACAAACATTCTTCTTCTTCCCAGACTCCAGTGGAAACGCACCCTGGAGGCACACGGTGGAATCCGACGCAAGAACAAATAGGCATATTGGAGATGCTCTATAGGAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAACACATCACTTCTCAGCTCTGCAAGTATGGTAAGATTGAAGGCAAGAATGTGTTTTATTGGTTTCAAAACCACAAAGCTCGGGAGCGACAGAAACAAAAGCGCAACAGTCTGGGCCTCGCTCACTCTCCTAGAACACCCCCTCCTCCCATCATCACTGCCTTCTCCTTCCACTCCTCGGGAGGGGAAGATAGTCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGACTGTTTGGTAGAGGATCATGACGATATATTGTGTAAAAATGAGGAAGAAGGAGATAGGACTCTGGAGTTATTCCCCTTGCACCCAGAAGGCAGATGA 678 49.71 MKIHQFARGLWEEPSLSLACKRLRPIPPNALNNSQHDQPTTPPTTSTLTTFDLKTFIRPDSAPRKLDSSDHHKHSSSSQTPVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEHITSQLCKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPPPPIITAFSFHSSGGEDSPYKRKCMNWGFDCLVEDHDDILCKNEEEGDRTLELFPLHPEGR 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26171404 26172703 + Sed0022266.1 Sed10g1226 727730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1226 225 MobiDBLite consensus disorder prediction 27 48 - -
Sed10g1226 225 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 225 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Sed10g1226 225 MobiDBLite consensus disorder prediction 60 94 - -
Sed10g1226 225 SMART HOX_1 86 153 IPR001356 GO:0003677(InterPro)
Sed10g1226 225 FunFam WUSCHEL-related homeobox 4 88 155 - -
Sed10g1226 225 MobiDBLite consensus disorder prediction 147 167 - -
Sed10g1226 225 Pfam Homeodomain 89 148 IPR001356 GO:0003677(InterPro)
Sed10g1226 225 CDD homeodomain 89 150 IPR001356 GO:0003677(InterPro)
Sed10g1226 225 MobiDBLite consensus disorder prediction 28 48 - -
Sed10g1226 225 SUPERFAMILY Homeodomain-like 84 154 IPR009057 -
Sed10g1226 225 MobiDBLite consensus disorder prediction 60 78 - -
Sed10g1226 225 MobiDBLite consensus disorder prediction 79 94 - -
Sed10g1226 225 Gene3D - 88 155 - -
Sed10g1226 225 ProSiteProfiles 'Homeobox' domain profile. 84 149 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1226 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2754 Sed-Chr8:39203507 Sed10g1226 Sed-Chr10:26171404 3.10E-24 dispersed
Sed10g1226 Sed-Chr10:26171404 Sed12g2115 Sed-Chr12:31821764 1.70E-23 dispersed
Sed13g1379 Sed-Chr13:19254980 Sed10g1226 Sed-Chr10:26171404 1.70E-25 transposed
Sed10g1226 Sed-Chr10:26171404 Sed11g0934 Sed-Chr11:23538013 3.20E-83 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39782 PF00046 Homeodomain 8.40E-19 CL0123 Sed TF