Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1226 ATGAAGATTCATCAGTTTGCACGTGGCCTTTGGGAGGAACCCTCTCTCTCCCTCGCTTGCAAGCGCTTACGCCCTATTCCCCCAAACGCCCTTAACAATTCACAACATGATCAACCCACCACTCCACCTACTACCTCTACGCTCACTACTTTCGACCTTAAGACCTTCATCCGCCCCGATTCCGCCCCGAGAAAACTCGACTCTTCGGACCATCACAAACATTCTTCTTCTTCCCAGACTCCAGTGGAAACGCACCCTGGAGGCACACGGTGGAATCCGACGCAAGAACAAATAGGCATATTGGAGATGCTCTATAGGAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAACACATCACTTCTCAGCTCTGCAAGTATGGTAAGATTGAAGGCAAGAATGTGTTTTATTGGTTTCAAAACCACAAAGCTCGGGAGCGACAGAAACAAAAGCGCAACAGTCTGGGCCTCGCTCACTCTCCTAGAACACCCCCTCCTCCCATCATCACTGCCTTCTCCTTCCACTCCTCGGGAGGGGAAGATAGTCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGACTGTTTGGTAGAGGATCATGACGATATATTGTGTAAAAATGAGGAAGAAGGAGATAGGACTCTGGAGTTATTCCCCTTGCACCCAGAAGGCAGATGA 678 49.71 MKIHQFARGLWEEPSLSLACKRLRPIPPNALNNSQHDQPTTPPTTSTLTTFDLKTFIRPDSAPRKLDSSDHHKHSSSSQTPVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEHITSQLCKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPPPPIITAFSFHSSGGEDSPYKRKCMNWGFDCLVEDHDDILCKNEEEGDRTLELFPLHPEGR 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26171404 26172703 + Sed0022266.1 Sed10g1226 727730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1226 225 MobiDBLite consensus disorder prediction 27 48 - -
Sed10g1226 225 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 225 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Sed10g1226 225 MobiDBLite consensus disorder prediction 60 94 - -
Sed10g1226 225 SMART HOX_1 86 153 IPR001356 GO:0003677(InterPro)
Sed10g1226 225 FunFam WUSCHEL-related homeobox 4 88 155 - -
Sed10g1226 225 MobiDBLite consensus disorder prediction 147 167 - -
Sed10g1226 225 Pfam Homeodomain 89 148 IPR001356 GO:0003677(InterPro)
Sed10g1226 225 CDD homeodomain 89 150 IPR001356 GO:0003677(InterPro)
Sed10g1226 225 MobiDBLite consensus disorder prediction 28 48 - -
Sed10g1226 225 SUPERFAMILY Homeodomain-like 84 154 IPR009057 -
Sed10g1226 225 MobiDBLite consensus disorder prediction 60 78 - -
Sed10g1226 225 MobiDBLite consensus disorder prediction 79 94 - -
Sed10g1226 225 Gene3D - 88 155 - -
Sed10g1226 225 ProSiteProfiles 'Homeobox' domain profile. 84 149 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2754 Sed-Chr8:39203507 Sed10g1226 Sed-Chr10:26171404 3.10E-24 dispersed
Sed10g1226 Sed-Chr10:26171404 Sed12g2115 Sed-Chr12:31821764 1.70E-23 dispersed
Sed13g1379 Sed-Chr13:19254980 Sed10g1226 Sed-Chr10:26171404 1.70E-25 transposed
Sed10g1226 Sed-Chr10:26171404 Sed11g0934 Sed-Chr11:23538013 3.20E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39782 PF00046 Homeodomain 8.40E-19 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1226 - - - 0.0