Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1234 ATGGCGGATCTGTACGGTACATCCCCTTCTTCGGATGTGGGTGCTTTGCCCCATGACCCTGAAGATTTCTCTTCCTCCTTGATCAACCCCACCAAGTTCATGCCCTTGTTGCACTCTCACCCACCCTGGCACTCCTCTTCTCTCTTCTCGCGGCGCCCGGACTCCACCTCCCTCGCCGGCGTCTCCTGCATGCTCCACTTTCCCGAGGATCGGCGTGCTTTCAACCACGCTCTGTCCGATTCTAGATTTGGCGATGCCTCCTATTTGGCTGTGAACTCCGCTTGCGGCGGCGGCGTGAAATTGTCGGGTCCTGGAGATTTCTTGAAAGAAAGTTCCGACAACGTGTTTTCTTCCTCCGGCGCTGGCGATTCCGACGCCTGGAAGAGAAGGGATCTTTCATCTGAGAACGATCTAGGCGATTTCAGCTGTGATAGCGAGGGTGGCGATGCGCCTGAAATTCCGTCCAGTACTGATCTGTCTCGAAATTCCTCGAAGCGAAGTAGAAGCGCGGAGGTTCATAATATGTCGGAAAAGAGACGAAGAAGGAGGATCAATGAGAAAATGAAAGCTCTTCAGAACCTAATTCCCAATTCCAACAAGACCGACAAGGCTTCCATGTTGGACGAAGCTATTGAGTATTTGAAGCAGCTTCAAGTTCAAGTTCAGGTGCCTGTCTTTTGTTCTTCTTTGTTTTGGGGCTGTGGATCTGAGGATTTGAACTCGTTTTCTCTTTTCTTTGACATGACTCGTCTTTCTTTTATATGCACTCGTTCATTGTATTGGTTACTAATTGGAAATAGTCCATCAATACGGGCCATAGAATATTATGTGCTGATATTATCAAAAAGTAATGTTCTTTTTGTCCACAAGATAGGAGTCAACTAA 885 48.14 MADLYGTSPSSDVGALPHDPEDFSSSLINPTKFMPLLHSHPPWHSSSLFSRRPDSTSLAGVSCMLHFPEDRRAFNHALSDSRFGDASYLAVNSACGGGVKLSGPGDFLKESSDNVFSSSGAGDSDAWKRRDLSSENDLGDFSCDSEGGDAPEIPSSTDLSRNSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQVQVQVPVFCSSLFWGCGSEDLNSFSLFFDMTRLSFICTRSLYWLLIGNSPSIRAIEYYVLILSKSNVLFVHKIGVN 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26434715 26437784 + Sed0000279.3 Sed10g1234 727738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1234 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983(InterPro)
Sed10g1234 294 PANTHER TRANSCRIPTION FACTOR PIF3 114 223 IPR044273 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1234 294 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983(InterPro)
Sed10g1234 294 FunFam Basic helix-loop-helix transcription factor 163 226 - -
Sed10g1234 294 Gene3D - 163 224 IPR036638 GO:0046983(InterPro)
Sed10g1234 294 CDD bHLH_AtPIF_like 170 215 IPR047265 -
Sed10g1234 294 MobiDBLite consensus disorder prediction 164 181 - -
Sed10g1234 294 MobiDBLite consensus disorder prediction 138 182 - -
Sed10g1234 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 223 IPR036638 GO:0046983(InterPro)
Sed10g1234 294 Coils Coil 174 194 - -
Sed10g1234 294 SMART finulus 174 223 IPR011598 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1234 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1232 Sed-Chr10:26434715 Sed10g1234 Sed-Chr10:26434715 6.00E-121 dispersed
Sed10g1234 Sed-Chr10:26434715 Sed14g0850 Sed-Chr14:16832120 2.70E-21 dispersed
Sed10g1233 Sed-Chr10:26434715 Sed10g1234 Sed-Chr10:26434715 5.70E-165 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g744 . . . . . . . . Cmo05g00172 Cmo12g00502 . . . Car12g00514 Sed10g1234 . Cpe07g00491 Bhi04g00369 Tan02g1798 Cmetu03g0637 . Hepe08g1296 . Lcy13g2092 . . . . . . . Cone4ag1587 Cone7ag1362 . . . . . Cme03g02063 Blo17g00875 . . . . . . Bma05g00041 . . . Cma12g00559 Cma05g00174 Car05g00147 . Cpe11g00143 . . . . . . . . . . . . . . . . Csa02g01934 Chy03g01556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007940 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39785 PF00010 HLH 1.60E-14 No_clan Sed TF