Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1235 ATGTCCAATTATTCGTTGTTGAATGATGAGCTCTCGAAGAGGACCTCCATTTTTGGTTTGCGATTGTGGGTTGTTCTGGGAATTTGCGTGGGTGCCGCCATTGTTATCGTTCTGTTTCTCATTTCTCTATGGTTCACTTCCAGGCGCAACACTGCGTCTAAATCCAAGCCCTCCGTGAACCCCACTATCCCAAATGTCTCCAAGGAAATCGTCGAAATCCGAATCGACCATGCTCGGAACCCCAATCGTTCTGACCCTAAACCTCAATTGGGTTCTAACCCTGAGCCCTCCTCGCCGGCGGCACAGCCCCCCTTAGCCACGGAGGAAGGGAGCCCACGCCATAGAATCCACATTGAAATTGGGAAGGACCACCGGATTTCGTACCCGGAGAGAGGCGGTGGCGGTTCGTCCCACGGCAGCGGAGAGGCTCGCTCCGGTGATCAGGCGCCTGTGGCTGTGCCGGAGGTCTCGCATTTGGGTTGGGGACATTGGTACTCTCTCAGACAGCTCGAGTATTCTACCAATGGTTTTGCGGATGAAAATGTGATTGGTGAAGGCGGATATGGAATTGTGTACCGTGGCCTTCTTCAGGACAACACTGTGGTGGCTATCAAAAACCTGCTCAATAACAGGGGACAGGCTGAGAAGGAGTTTAAGGTTGAAGTAGAAGCGATTGGACGCGTTCGGCACAAGAATCTGGTGCGTTTGCTTGGATATTGTGCTGAAGGAGCTCATAGGATGCTTGTTTACGAGTACGTTGATAATGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGGCCTTGTAGCCCTCTCACATGGGATATTAGAATGAATATAATTGTTGGAACAGCGAAAGGGTTAACATATCTCCACGAGGGGCTCGAGCCTAAGGTTGTTCATCGTGATATCAAGTCGAGTAACATTTTGATTGACAAGCAGTGGAATTCAAAAGTTTCAGACTTTGGCCTAGCAAAGCTCCTTGGCTCAGAAAGAAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGATATGTAGCTCCTGAATATGCTAGTACTGGTATGTTAAATGAAAAAAGTGATGTATATAGCTTTGGCATCCTCATTATGGAAATAATTTCAGGGAGAAATCCGGTGGACTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTCAGTAATCGAAATGCGGAGGGAGTTCTGGATCCTAAGTTGCCCGAGAAGCCTTCCACAAGGGCACTAAAGCGTGCTCTCTTAGTAGCTTTACGGTGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTAGAAGCTGATGAGTTCCCTTTCCGAGATGATCGTAGAGTGGGACGGGAATCAGGACGATCACTGCTAAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGACAGCAGTGGATATGAAAGTGGAGCAACTCAAGCAAGCCGGCATCTATGCAGAAAGCAAGAAAATGAACAGCAGCCTCGCGAACCTTACACTTTAAGGTGA 1551 48.1 MSNYSLLNDELSKRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNTASKSKPSVNPTIPNVSKEIVEIRIDHARNPNRSDPKPQLGSNPEPSSPAAQPPLATEEGSPRHRIHIEIGKDHRISYPERGGGGSSHGSGEARSGDQAPVAVPEVSHLGWGHWYSLRQLEYSTNGFADENVIGEGGYGIVYRGLLQDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILIDKQWNSKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGRESGRSLLKEKLMERLVSESGDSSGYESGATQASRHLCRKQENEQQPREPYTLR 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26440288 26443573 + Sed0000921.1 Sed10g1235 727739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1235 516 PANTHER OS01G0323000 PROTEIN 6 487 IPR052232 -
Sed10g1235 516 Pfam Protein kinase domain 179 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1235 516 ProSitePatterns Protein kinases ATP-binding region signature. 183 205 IPR017441 GO:0005524(InterPro)
Sed10g1235 516 ProSiteProfiles Protein kinase domain profile. 177 435 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1235 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1235 516 FunFam Probable serine/threonine-protein kinase At1g01540 157 252 - -
Sed10g1235 516 MobiDBLite consensus disorder prediction 110 129 - -
Sed10g1235 516 SUPERFAMILY Protein kinase-like (PK-like) 158 449 IPR011009 -
Sed10g1235 516 MobiDBLite consensus disorder prediction 483 498 - -
Sed10g1235 516 MobiDBLite consensus disorder prediction 78 150 - -
Sed10g1235 516 Gene3D Transferase(Phosphotransferase) domain 1 253 460 - -
Sed10g1235 516 Gene3D Phosphorylase Kinase; domain 1 152 252 - -
Sed10g1235 516 CDD STKc_IRAK 183 449 - -
Sed10g1235 516 FunFam Putative receptor-like serine/threonine-protein kinase 253 463 - -
Sed10g1235 516 MobiDBLite consensus disorder prediction 478 516 - -
Sed10g1235 516 SMART serkin_6 177 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3935 Sed-Chr4:47437172 Sed10g1235 Sed-Chr10:26440288 2.10E-110 dispersed
Sed05g2320 Sed-Chr5:35671433 Sed10g1235 Sed-Chr10:26440288 9.50E-138 dispersed
Sed09g0596 Sed-Chr9:6784440 Sed10g1235 Sed-Chr10:26440288 2.10E-129 dispersed
Sed10g1235 Sed-Chr10:26440288 Sed12g0162 Sed-Chr12:927919 4.50E-165 dispersed
Sed10g0650 Sed-Chr10:4431141 Sed10g1235 Sed-Chr10:26440288 1.50E-194 wgd
Sed10g1235 Sed-Chr10:26440288 Sed11g0939 Sed-Chr11:23742419 7.00E-243 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79851 PF00069 Pkinase 2.40E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1235 - - - 0.0