Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1240 ATGGATATTCACGAGCATGTAAAGTCTGGGGATCAGATGGATTTTCTGACTGTGATTCACCAAATGGGAAAATTTCCTGAGTTTCTTGAATTTACCGAAATGCCACCCACCGCTTTTGCTTTTGCTTCTTCCATCCAAACCCCAAATCCCACCTTTCCTTCTTTCAATAACGCCGCCGACCCTCTTCCACCGCCATGTTTTCTGCCGTATTCCGCCTCTCCACGGTGGAGAACCCATCTTGCCTACACCGGAACTGCCGCCAACTCGAAGGAAAATTCAATGGCGGCGATGAGGGAAATGATGTACCAGATAGCGGCAATGCAGCCGATCCACATAGACCCAGAATCGGTGAAGCCACCGAAACGGCGGAACGTGAAGATCTCAAAAGACCCACAAAGCATAGCGGCTCGGCATCGACGAGAGAGAATCAGCCAAAAAATTAGAATTCTTCGAAGAATAGTTCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTGGACGAAGCCATTCATTACGTCAAGTTCTTGAAAAACCAACTCCACTCTCTCCAACACACCGCCGCCGCGGCCGGCCGGCGGGAGCAATCGTAA 591 50.76 MDIHEHVKSGDQMDFLTVIHQMGKFPEFLEFTEMPPTAFAFASSIQTPNPTFPSFNNAADPLPPPCFLPYSASPRWRTHLAYTGTAANSKENSMAAMREMMYQIAAMQPIHIDPESVKPPKRRNVKISKDPQSIAARHRRERISQKIRILRRIVPGGTKMDTASMLDEAIHYVKFLKNQLHSLQHTAAAAGRREQS 196
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 26677131 26678650 - Sed0018908.1 Sed10g1240 727744
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1240 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 187 IPR036638 GO:0046983(InterPro)
Sed10g1240 196 SMART finulus 133 182 IPR011598 GO:0046983(InterPro)
Sed10g1240 196 Gene3D - 126 195 IPR036638 GO:0046983(InterPro)
Sed10g1240 196 Pfam Helix-loop-helix DNA-binding domain 135 177 IPR011598 GO:0046983(InterPro)
Sed10g1240 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983(InterPro)
Sed10g1240 196 FunFam BHLH transcription factor 130 194 - -
Sed10g1240 196 CDD bHLH_AtIND_like 128 184 - -
Sed10g1240 196 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 65 189 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0473 Sed-Chr1:3643380 Sed10g1240 Sed-Chr10:26677131 7.00E-37 dispersed
Sed10g1240 Sed-Chr10:26677131 Sed14g0619 Sed-Chr14:6255720 7.70E-17 dispersed
Sed14g0223 Sed-Chr14:2454099 Sed10g1240 Sed-Chr10:26677131 1.80E-34 transposed
Sed10g1240 Sed-Chr10:26677131 Sed13g1761 Sed-Chr13:22619005 6.30E-43 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39786 PF00010 HLH 2.90E-07 No_clan Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1240 - - - 0.0