Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sed10g1240	ATGGATATTCACGAGCATGTAAAGTCTGGGGATCAGATGGATTTTCTGACTGTGATTCACCAAATGGGAAAATTTCCTGAGTTTCTTGAATTTACCGAAATGCCACCCACCGCTTTTGCTTTTGCTTCTTCCATCCAAACCCCAAATCCCACCTTTCCTTCTTTCAATAACGCCGCCGACCCTCTTCCACCGCCATGTTTTCTGCCGTATTCCGCCTCTCCACGGTGGAGAACCCATCTTGCCTACACCGGAACTGCCGCCAACTCGAAGGAAAATTCAATGGCGGCGATGAGGGAAATGATGTACCAGATAGCGGCAATGCAGCCGATCCACATAGACCCAGAATCGGTGAAGCCACCGAAACGGCGGAACGTGAAGATCTCAAAAGACCCACAAAGCATAGCGGCTCGGCATCGACGAGAGAGAATCAGCCAAAAAATTAGAATTCTTCGAAGAATAGTTCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTGGACGAAGCCATTCATTACGTCAAGTTCTTGAAAAACCAACTCCACTCTCTCCAACACACCGCCGCCGCGGCCGGCCGGCGGGAGCAATCGTAA	591	50.76	MDIHEHVKSGDQMDFLTVIHQMGKFPEFLEFTEMPPTAFAFASSIQTPNPTFPSFNNAADPLPPPCFLPYSASPRWRTHLAYTGTAANSKENSMAAMREMMYQIAAMQPIHIDPESVKPPKRRNVKISKDPQSIAARHRRERISQKIRILRRIVPGGTKMDTASMLDEAIHYVKFLKNQLHSLQHTAAAAGRREQS	196

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
10	26677131	26678650	-	Sed0018908.1	Sed10g1240	727744

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sed10g1240	196	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	131	187	IPR036638	GO:0046983(InterPro)
	Sed10g1240	196	SMART	finulus	133	182	IPR011598	GO:0046983(InterPro)
	Sed10g1240	196	Gene3D	-	126	195	IPR036638	GO:0046983(InterPro)
	Sed10g1240	196	Pfam	Helix-loop-helix DNA-binding domain	135	177	IPR011598	GO:0046983(InterPro)
	Sed10g1240	196	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	127	176	IPR011598	GO:0046983(InterPro)
	Sed10g1240	196	FunFam	BHLH transcription factor	130	194	-	-
	Sed10g1240	196	CDD	bHLH_AtIND_like	128	184	-	-
	Sed10g1240	196	PANTHER	TRANSCRIPTION FACTOR HEC3-RELATED	65	189	IPR045843	GO:0003700(InterPro)\|GO:0006355(InterPro)

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Sed01g0473	Sed-Chr1:3643380	Sed10g1240	Sed-Chr10:26677131	7.00E-37	dispersed
	Sed10g1240	Sed-Chr10:26677131	Sed14g0619	Sed-Chr14:6255720	7.70E-17	dispersed
	Sed14g0223	Sed-Chr14:2454099	Sed10g1240	Sed-Chr10:26677131	1.80E-34	transposed
	Sed10g1240	Sed-Chr10:26677131	Sed13g1761	Sed-Chr13:22619005	6.30E-43	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	39786	PF00010	HLH	2.90E-07	No_clan	Sed	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sed10g1240	-		-	-	0.0