Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1240 | ATGGATATTCACGAGCATGTAAAGTCTGGGGATCAGATGGATTTTCTGACTGTGATTCACCAAATGGGAAAATTTCCTGAGTTTCTTGAATTTACCGAAATGCCACCCACCGCTTTTGCTTTTGCTTCTTCCATCCAAACCCCAAATCCCACCTTTCCTTCTTTCAATAACGCCGCCGACCCTCTTCCACCGCCATGTTTTCTGCCGTATTCCGCCTCTCCACGGTGGAGAACCCATCTTGCCTACACCGGAACTGCCGCCAACTCGAAGGAAAATTCAATGGCGGCGATGAGGGAAATGATGTACCAGATAGCGGCAATGCAGCCGATCCACATAGACCCAGAATCGGTGAAGCCACCGAAACGGCGGAACGTGAAGATCTCAAAAGACCCACAAAGCATAGCGGCTCGGCATCGACGAGAGAGAATCAGCCAAAAAATTAGAATTCTTCGAAGAATAGTTCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTGGACGAAGCCATTCATTACGTCAAGTTCTTGAAAAACCAACTCCACTCTCTCCAACACACCGCCGCCGCGGCCGGCCGGCGGGAGCAATCGTAA | 591 | 50.76 | MDIHEHVKSGDQMDFLTVIHQMGKFPEFLEFTEMPPTAFAFASSIQTPNPTFPSFNNAADPLPPPCFLPYSASPRWRTHLAYTGTAANSKENSMAAMREMMYQIAAMQPIHIDPESVKPPKRRNVKISKDPQSIAARHRRERISQKIRILRRIVPGGTKMDTASMLDEAIHYVKFLKNQLHSLQHTAAAAGRREQS | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 26677131 | 26678650 | - | Sed0018908.1 | Sed10g1240 | 727744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1240 | 196 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 131 | 187 | IPR036638 | GO:0046983(InterPro) | |
Sed10g1240 | 196 | SMART | finulus | 133 | 182 | IPR011598 | GO:0046983(InterPro) | |
Sed10g1240 | 196 | Gene3D | - | 126 | 195 | IPR036638 | GO:0046983(InterPro) | |
Sed10g1240 | 196 | Pfam | Helix-loop-helix DNA-binding domain | 135 | 177 | IPR011598 | GO:0046983(InterPro) | |
Sed10g1240 | 196 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 127 | 176 | IPR011598 | GO:0046983(InterPro) | |
Sed10g1240 | 196 | FunFam | BHLH transcription factor | 130 | 194 | - | - | |
Sed10g1240 | 196 | CDD | bHLH_AtIND_like | 128 | 184 | - | - | |
Sed10g1240 | 196 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 65 | 189 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0473 | Sed-Chr1:3643380 | Sed10g1240 | Sed-Chr10:26677131 | 7.00E-37 | dispersed | |
Sed10g1240 | Sed-Chr10:26677131 | Sed14g0619 | Sed-Chr14:6255720 | 7.70E-17 | dispersed | |
Sed14g0223 | Sed-Chr14:2454099 | Sed10g1240 | Sed-Chr10:26677131 | 1.80E-34 | transposed | |
Sed10g1240 | Sed-Chr10:26677131 | Sed13g1761 | Sed-Chr13:22619005 | 6.30E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39786 | PF00010 | HLH | 2.90E-07 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1240 | - | - | - | 0.0 |