Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1248 ATGAATTTCAAGGGTTTTGGGAATGACCCATCTGGCGGAAACGGCGGAGGAGGTGGAAGACTTCCGGCGAACTATCCATTGGCCCGACAATCGTCGATATACTCGCTGACGTTCGATGAATTTCAGAGTATGGGGAGTATTGGGAAGGATTTTGGGTCGATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACCATGGCATCTTCTTCTTCTGCTAAAGAAGGAGCTGCCAGTGTTGGTGTTGGTGTTGGTGTTGGCGGTGGGCATTTGCAGAGACAGGGCTCTTTGACTCTGCCGCGGACGCTCAGCTTGAAGAAGGTGGATGAGGTTTGGAAGGGCATAATCAATGAATATGGCGTTGCTTCAGATGGGAATACCACTGTTGCTTCTAGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACTCTTGAAGAGTTTTTGTTCAAAGCTGGCGTTGTGAGAGAGGATACTCAACTGCCTGCAAATCCCAACAATGGAGGGTTCTTTCCCACCAACACTGGTTTTGGCATTGATTTTCAGCGGCCAGGTAAAACTATTGACATTAACAACCACGTTCCGGTTCAATCGTCGAACTTATCGTTGAATGTCAATGGGGTTAGAGCACATCCGCCGCAGCCAATATTTCCAAAGCAGTCTGTTGTGACCTATGGATCTCAGTTGCCTTTACCTAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGTGGGATTATGGGGATTGCAGATCAAGGGTTGAGCACAAATTTGATGCAAGGCTCTGCGTTGCCGAGTGGAAGGATGGGAATGGTTAGTTTAGCAACTGGGCCGATGCCTGTTGCAACAGGATCACCAGCAAACCAATTATCATCTGATGGGATTGGAAAGAGCAATGGCAATACCTCGTCCGTGTCTCCGGTGCCTTACGCTCTTAATGGAGTACGAGGGAGGAGAAGCAATGGGACTGTGGAGAAGGTTGTTGAGAGGAGGCAGCGGAGAATGATAAAAAATCGAGAGTCAGCTGCTAGATCGCGGGCTCGAAAGCAGGCTTACACGATGGAATTGGAAGCTGAAGTTGACAAGCTAAAAAAGGAGAACCAAGAACTCCAGAAAAAACAGGCAGAAATCTTGGAAATGCAAAAGAACCTGGCATTGGAAGTAATGAATAAGCAACAAGGAATCAAGAAGCGATGCTTAAGGCGAACGCAGTCCATGGTGATTTTAGAGGATGTTGTCTGA 1257 47.57 MNFKGFGNDPSGGNGGGGGRLPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSSSAKEGAASVGVGVGVGGGHLQRQGSLTLPRTLSLKKVDEVWKGIINEYGVASDGNTTVASSLQQRQQTLGEMTLEEFLFKAGVVREDTQLPANPNNGGFFPTNTGFGIDFQRPGKTIDINNHVPVQSSNLSLNVNGVRAHPPQPIFPKQSVVTYGSQLPLPSDGQLASPGIRGGIMGIADQGLSTNLMQGSALPSGRMGMVSLATGPMPVATGSPANQLSSDGIGKSNGNTSSVSPVPYALNGVRGRRSNGTVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVDKLKKENQELQKKQAEILEMQKNLALEVMNKQQGIKKRCLRRTQSMVILEDVV 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26918304 26921642 - Sed0016431.1 Sed10g1248 727752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1248 418 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 333 390 - -
Sed10g1248 418 Coils Coil 351 388 - -
Sed10g1248 418 MobiDBLite consensus disorder prediction 1 22 - -
Sed10g1248 418 Pfam bZIP transcription factor 335 393 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1248 418 CDD bZIP_plant_BZIP46 335 387 - -
Sed10g1248 418 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 333 382 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1248 418 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 409 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Sed10g1248 418 MobiDBLite consensus disorder prediction 302 321 - -
Sed10g1248 418 SMART brlzneu 331 395 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1248 418 Gene3D - 333 388 - -
Sed10g1248 418 SUPERFAMILY Leucine zipper domain 335 388 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1248 418 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 338 353 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1248 Sed-Chr10:26918304 Sed11g0945 Sed-Chr11:23811673 4.40E-179 dispersed
Sed10g1248 Sed-Chr10:26918304 Sed11g0943 Sed-Chr11:23811673 4.40E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39788 PF00170 bZIP_1 1.80E-13 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1248 K14432 - csv:101223043 588.186