Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1254 ATGGACGGCGGCGATGGAACGGTGAGGCTCGGCGCTCTGAACTTGAAGCCGGATCCGAACCGCTTCGATTTGGGGCCAGATGTGTCGGTTTCGTCGCCGGTGACCAGGCAGAAAGCCGCCGCTGCTAAACAGTTCATAGAGAATCATTACAGGAACCATCTCCAAGGCCTGCAGGATCGCATCGAGAGACGGAGAACGCTTCAGCGAAGGGCTCAAGAAGCTCAGGTGTCGGCTGAAGAACAGGAAGAGATGATGAGGAATTTGGAGCGCAGAGAAACAGAATTCATGAGACTGCAAAGACGTAAAGTTGGAATTGATGACTTTGAACAATTGACAGTTATCGGAAAAGGTGCATTCGGTGAGGTTAGATTATGCCTTGAAAAAGGAACTAAGAAAATTTTTGCCATGAAGAAACTGAAGAAATCAGAGATGCTTAGCCGTGGACAGGTTGAGCATGTTCGATCGGAGAGGAATTTACTTGCGGAGGTTGATAGTCGATGCATTGTAAAACTCTTTTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAATATTTACCTGGTGGTGACATAATGACATTGCTAATGAGAGAAGACATTTTGTCCGAGGATATTGCTCGCTTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGCCATCTTAAGCTTTCAGATTTTGGCTTGTGCAAACCTCTGGATGATAAGTATTCAAGTATACTTATGAATGACGAAGATTTAACTGCCCAGCAGGCCAAAAGTGAAGTCCAAGGTCATACGGACTCTAATGGATCCAATTGGATGATGCCGAAAGAACAAATTCAACAATGGAAGCGCAATCGCCGTGCATTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTTTTGCTTAAGAAAGGATATGGAATTGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGCTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTCCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCGGATGAACCAAAAATCTCAGAGGAAGCTAAGGATCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACACGAGGAGTAGAAGAAATAAAGGCACATCCATGGTTCCATGGCATTCAGTGGGATAAGCTGTATGAAATGGAAGCTGCATACAAACCAACAGTCACTGGAGAACTAGACACTCAGAACTTTGAAAAGTTTCCTGAAGTACAAGACCCTCCATCAGAAATGGCAACTGTTGGACCTTGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAGACATCAAATCACTTGAGAGTACAGGTACGGATATGCATTTGAACAAGTCATCGAAAACACCATCTCTAGTTTCCTTGTTGGGTCGAATAGATTTGCAGGAAACTGTGATACCAGAAGTTGAACAAAAGCAGGAGGAATAA 1572 42.37 MDGGDGTVRLGALNLKPDPNRFDLGPDVSVSSPVTRQKAAAAKQFIENHYRNHLQGLQDRIERRRTLQRRAQEAQVSAEEQEEMMRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCLEKGTKKIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDIARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILMNDEDLTAQQAKSEVQGHTDSNGSNWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPDEPKISEEAKDLISHLLCDVETRLGTRGVEEIKAHPWFHGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSEMATVGPWRKMLTSKDTNFIGFTFKKSDIKSLESTGTDMHLNKSSKTPSLVSLLGRIDLQETVIPEVEQKQEE 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27155025 27166830 + Sed0028178.1 Sed10g1254 727758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1254 523 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Sed10g1254 523 ProSiteProfiles Protein kinase domain profile. 108 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1254 523 Coils Coil 64 101 - -
Sed10g1254 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 477 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed10g1254 523 SUPERFAMILY Protein kinase-like (PK-like) 84 462 IPR011009 -
Sed10g1254 523 Pfam Protein kinase domain 108 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1254 523 Pfam Protein kinase domain 308 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1254 523 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1254 523 SMART serkin_6 108 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1254 523 Gene3D Phosphorylase Kinase; domain 1 430 441 - -
Sed10g1254 523 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Sed10g1254 523 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Sed10g1254 523 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1254 523 Gene3D Phosphorylase Kinase; domain 1 78 191 - -
Sed10g1254 523 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
Sed10g1254 523 CDD STKc_NDR_like 106 475 - -
Sed10g1254 523 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Sed10g1254 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1254 523 SMART pkinase_C_6 412 476 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1254 523 CDD MobB_NDR_LATS-like 42 103 - -
Sed10g1254 523 Gene3D Transferase(Phosphotransferase) domain 1 309 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1254 Sed-Chr10:27155025 Sed13g1883 Sed-Chr13:23834491 2.90E-164 dispersed
Sed10g1254 Sed-Chr10:27155025 Sed04g1994 Sed-Chr4:34492292 1.50E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79852 PF00069 Pkinase 1.70E-64 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1254 K08790 - csv:101222805 975.311