Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g1255 | ATGGCTCAAAATTTCCTACTCATTCCCATCTTTCTTCTTCCCCTTCTTCTTCTTCTACCTCTAATTTTCTTTCATAACCAAAAGAACAAGAAAATCGCAAAGAAGCTCCCTCCTGGCTCAATGGGCTGGCCTCTAATTGGAGAGACTTTCAATTTCTACTCTCAACATCCAACCTCTTATTTTCTTGGAAAACAAAAAAGGTATGGTGACATATTGAAGACGCACATTCTGGGGTGCCCGTGTGTGATGTTGGCAACTCCGGAGGCGGCTCGGTTCGTGCTAGTGACACAAGCTCATCTGTTCAAGCCCACATACCCACAAAGCAAGGAGCGTCTAATCGGACCTTCGGCTCTGTTTTTCCACCAAAGTGAAACCCATTTGCGGCTGCGTAAGCTAATCCAAAGCTCCTTCTCGCCCGACACGGTCCGGACCCTGGTCCCTCACATCCACGAGCTAGCCATCTCTGCATTGCCCCAATCCCCCAATGCCCACCTCATCAACACCTTCCATCATATGAAAAAGTTCTCTTTTGAAGTCGGAGTTCTGGCGATTTTTGGGGGTTTGAAGGACGAAAATTACAGAGAAGAATTAATGATCAACTATTCCATAGTGAACAAAGGCTATAATTCTTTTCCAACCAACATTCCCGGATCGCTTTACAAAAAAGCACTAAAAGCCAGAAAGAGGCTAGGAGAGATTATAAGGTGTATAATTTTAGAGAAAAGGGAGAAAGGAATGGAATTGGTGGAGAAGAATTTGTTGGGTTGTTTGCTAAAATGGAGAGATGAAAAAGGACAGAGTTTAAGTGATGAACAGATTGGTGATAATATAATTGGAGTTTTATTTGCTGCTCAGGACACCACTGCCAGTGTTCTTACATGGCTCTTTAAATTTCTCCATGATAACCACAAAGTTCTAGAAGCTGTCAAGGTGGAGCAAAAGGCAATTGAAGAAAGCATTAATGAGAAGAACCGACCAATGAGTTGGGCTGAGACACGAAACATGCCGTTTACCAATAAGGTGGTGTTGGAGAGCTTGAGAATGGCTAGTATTATATCATACACTTTTAGGGAAGCTGTAGAAGACGTCGAATACAATGGATATTTAATTCCAAAGGGCTGGAAAGTAATGCCCTTATTCAGGAATATTCATCACAATCCTGACTACTTTGTTGACCCTCACAAATTTGATCCTTCAAGATTTGAGGTTGCTCCAAGACCCAATACATTCATGCCATTTGGCGGTGGGGTCCATTCCTGCCCCGGAAATGAGCTTGCCAAGCTTGAAATCTTGATCATGATCCATCATCTAGTCACCAAATTCAGGTGGGAATTGGCGGGGGAAAGAGATGGGATTGAGCATGGGCCATTCCCAGTGCCTAGAGATGGGCTTCCAATCAGAGTCTGGAGATTATCCAATTAA | 1422 | 43.46 | MAQNFLLIPIFLLPLLLLLPLIFFHNQKNKKIAKKLPPGSMGWPLIGETFNFYSQHPTSYFLGKQKRYGDILKTHILGCPCVMLATPEAARFVLVTQAHLFKPTYPQSKERLIGPSALFFHQSETHLRLRKLIQSSFSPDTVRTLVPHIHELAISALPQSPNAHLINTFHHMKKFSFEVGVLAIFGGLKDENYREELMINYSIVNKGYNSFPTNIPGSLYKKALKARKRLGEIIRCIILEKREKGMELVEKNLLGCLLKWRDEKGQSLSDEQIGDNIIGVLFAAQDTTASVLTWLFKFLHDNHKVLEAVKVEQKAIEESINEKNRPMSWAETRNMPFTNKVVLESLRMASIISYTFREAVEDVEYNGYLIPKGWKVMPLFRNIHHNPDYFVDPHKFDPSRFEVAPRPNTFMPFGGGVHSCPGNELAKLEILIMIHHLVTKFRWELAGERDGIEHGPFPVPRDGLPIRVWRLSN | 473 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 27194885 | 27201673 | + | Sed0016508.1 | Sed10g1255 | 727759 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g1255 | 473 | PANTHER | CYTOCHROME P450 26 | 35 | 447 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Sed10g1255 | 473 | FunFam | Abscisic acid 8 | 26 | 470 | - | - | |
| Sed10g1255 | 473 | Gene3D | Cytochrome P450 | 25 | 471 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | Pfam | Cytochrome P450 | 37 | 448 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | PRINTS | E-class P450 group I signature | 339 | 357 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | PRINTS | E-class P450 group I signature | 65 | 84 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | PRINTS | E-class P450 group I signature | 410 | 420 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | PRINTS | E-class P450 group I signature | 379 | 403 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | PRINTS | E-class P450 group I signature | 420 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | PRINTS | E-class P450 group I signature | 272 | 289 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 413 | 422 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed10g1255 | 473 | CDD | CYP90-like | 65 | 468 | - | - | |
| Sed10g1255 | 473 | PRINTS | P450 superfamily signature | 340 | 351 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | PRINTS | P450 superfamily signature | 420 | 431 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | PRINTS | P450 superfamily signature | 283 | 300 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | PRINTS | P450 superfamily signature | 411 | 420 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1255 | 473 | SUPERFAMILY | Cytochrome P450 | 34 | 469 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g2586 | Sed-Chr5:37601502 | Sed10g1255 | Sed-Chr10:27194885 | 1.30E-163 | dispersed | |
| Sed09g0969 | Sed-Chr9:31838090 | Sed10g1255 | Sed-Chr10:27194885 | 2.70E-47 | dispersed | |
| Sed09g0971 | Sed-Chr9:31914675 | Sed10g1255 | Sed-Chr10:27194885 | 2.70E-49 | dispersed | |
| Sed10g1255 | Sed-Chr10:27194885 | Sed13g1743 | Sed-Chr13:22400999 | 3.60E-153 | dispersed | |
| Sed10g1255 | Sed-Chr10:27194885 | Sed13g1742 | Sed-Chr13:22400999 | 2.30E-176 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g1255 | K09843 | - | vvi:100246968 | 652.514 |