Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1280 ATGGGGATCGCTAATCTCTCATACGAGGAATGTCGACGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTCAATCTGCCCTTGCTTTCCCAAGCTCTCCTCGATTCTTCCCCTTCCAAATCCTCCCCTAGTAAGCTGTCCAAGCCTCGCGTGGCGCAGAAACAACTCGTCGTGGTGAGGCGGTCCAGTCGTGTAGCGAAACAATTGGCCCCCGTTTACGCCGAAGTTGTTGTGAATCGCGTGGTGATTCCTAGAAGGACCTCCAAATGTAGAGATCTTTCAAATAGGGTTTATGCTTCTGATGAAGCAAGACAAAATGCCTTTGAAAGAGCTGAGAAATTACAATCTGGGTTGGAACCGAGTTATCCCAACTTTATTAAATCAATGCTTCCTTCTCATGTTAGCGGTGGATTCTGGATGGGCCTTCCCTCTCATTTCTGCAAGACGCACCTCCCGAATCGTGATGGAGTTATGACATTAATCGATGAGGATGGAGATGAGTATCCGACAGTATATTTAGCACGAAAAACAGGACTTAGTGGTGGATGGTTGGGTTTTGCAGTTGCTCACAAATTGGCAGATGGAGATGCTGTGATTTTTCAATTCATTAAGCCTCTAACGTGCAAGGTGTACATCCTTAGGGCGAATAGTTCCAGAGAAGATAGTGATTCTAATAGTAGCTAA 690 45.94 MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLSKPRVAQKQLVVVRRSSRVAKQLAPVYAEVVVNRVVIPRRTSKCRDLSNRVYASDEARQNAFERAEKLQSGLEPSYPNFIKSMLPSHVSGGFWMGLPSHFCKTHLPNRDGVMTLIDEDGDEYPTVYLARKTGLSGGWLGFAVAHKLADGDAVIFQFIKPLTCKVYILRANSSREDSDSNSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28389471 28392155 - Sed0026519.1 Sed10g1280 727784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1280 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Sed10g1280 229 Coils Coil 6 26 - -
Sed10g1280 229 Gene3D - 101 219 IPR015300 -
Sed10g1280 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 221 IPR044837 -
Sed10g1280 229 Pfam B3 DNA binding domain 127 217 IPR003340 GO:0003677(InterPro)
Sed10g1280 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Sed10g1280 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Sed10g1280 229 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1280 Sed-Chr10:28389471 Sed10g1282 Sed-Chr10:28394295 2.10E-98 dispersed
Sed10g1280 Sed-Chr10:28389471 Sed10g1281 Sed-Chr10:28390733 7.90E-114 tandem
Sed10g1280 Sed-Chr10:28389471 Sed11g0972 Sed-Chr11:24432551 5.50E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39789 PF02362 B3 1.20E-13 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1280 - - - 0.0