Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1281 ATGGGGATCGCTAATCTCTCATACGAGGAATGTCGACGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTCAATCTGCCCTTGCTTTCCCAAGCTCTCCTCGATTCTTCCCCTTCCAAATCCTCCCCTAGTAAGCTGTCCAAGCCTCGCGTGGCGCAGAAACAACTCGTCGTGGTGAGGCGGTCCAGTCGTGTAGCGAAACAATTGGCCCCCGTTTACGCCGAAGTTGTTGTGAATCGCGTGGTGATTCCTAGAAGGACCTCCAAATGTAGAGATCTTTCAAATAGGGTTTATGCTTCTGATGAAGCAAGACAAAATGCCTTTGAAAGAGCTGAGAAATTACAATCTGGGTTGGAACCGAGTTATCCCAACTTTATTAAATCAATGCTTCCTTCTCATGTTAGCGGTGGATTCTGGATGGGCCTTCCCTCTCATTTCTGCAAGACGCACCTCCCGAATCGTGATGGAGTTATGACATTAATCGATGAGGATGGAGATGAGTATCCGACAGTATATTTAGCACGAAAAACAGGACTTAGTGGTGGATGGTTGGGTTTTGCAGTTGCTCACAAATTGGCAGATGGAGATGCTGTGATTTTTCAATTCATTAAGCCTCTAACGTGCAAGGTAATTGATTTCCTTCAATATCCTTGA 660 45.91 MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLSKPRVAQKQLVVVRRSSRVAKQLAPVYAEVVVNRVVIPRRTSKCRDLSNRVYASDEARQNAFERAEKLQSGLEPSYPNFIKSMLPSHVSGGFWMGLPSHFCKTHLPNRDGVMTLIDEDGDEYPTVYLARKTGLSGGWLGFAVAHKLADGDAVIFQFIKPLTCKVIDFLQYP 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28390733 28392155 - Sed0026519.2 Sed10g1281 727785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1281 219 Pfam B3 DNA binding domain 127 211 IPR003340 GO:0003677(InterPro)
Sed10g1281 219 SMART B3_2 127 219 IPR003340 GO:0003677(InterPro)
Sed10g1281 219 Gene3D - 101 216 IPR015300 -
Sed10g1281 219 ProSiteProfiles B3 DNA-binding domain profile. 127 219 IPR003340 GO:0003677(InterPro)
Sed10g1281 219 Coils Coil 6 26 - -
Sed10g1281 219 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 212 IPR044837 -
Sed10g1281 219 SUPERFAMILY DNA-binding pseudobarrel domain 121 213 IPR015300 -
Sed10g1281 219 CDD B3_DNA 125 206 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1281 Sed-Chr10:28390733 Sed11g0972 Sed-Chr11:24432551 9.60E-101 dispersed
Sed10g1280 Sed-Chr10:28389471 Sed10g1281 Sed-Chr10:28390733 7.90E-114 tandem
Sed10g1281 Sed-Chr10:28390733 Sed10g1282 Sed-Chr10:28394295 1.80E-91 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39790 PF02362 B3 6.60E-13 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1281 - - - 0.0