Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1282 | ATGGGGATCGCCAATCTCTCCTACGAGGAATGTCGCCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTCAATCTGCCCCTGCTTTCCCAAGCTCTCCTCCATTCTTCCCCTTCCAAATCCTCGCCTGGTAAACAGGCCAAACCTCGTGCGGCGCAGAAACAGCTTCTTGTGGTGAGGAGATCCAGTCGCGTAGCAAATCAACCAGCGCCTGTTTACGCCGAAGTTGTTGTCGATCGTCTGGCGGTTCCTAGAAGGCTTTCGCGGGCGAGAGATTTTCCAAACAAGTTTTACGCTTCGGATGGAGCAAGAAGAAATGCGTATGAAAGAGCTGAGCAGTTACAATCTGGATTGGAGCCCAATTATCCCAGCTGTGTTAAGTCCATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGTCTTCCTTCTTATTTCTGTAAAACACACCTTCCAAAAAATGATGGAGCAATGACTGTGATAGATGAAGATGGCGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGGGTTTTCAATTGCTCATAGATTGGCAGATGGGGATGCTGTGGTTTTTCAACTCATTAAACCTACAACCTGCAAGGTGTACATCCTTAGAGCAAGCGATTCGAAAGAAGATAGTGATTCTAGTAGTAGCTAA | 690 | 46.81 | MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLHSSPSKSSPGKQAKPRAAQKQLLVVRRSSRVANQPAPVYAEVVVDRLAVPRRLSRARDFPNKFYASDGARRNAYERAEQLQSGLEPNYPSCVKSMVRSHVSGCFWLGLPSYFCKTHLPKNDGAMTVIDEDGDEYPIIYLARKTGFSGGWKGFSIAHRLADGDAVVFQLIKPTTCKVYILRASDSKEDSDSSSS | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28394295 | 28403647 | - | Sed0024658.1 | Sed10g1282 | 727786 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1282 | 229 | Coils | Coil | 6 | 26 | - | - | |
Sed10g1282 | 229 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 12 | 222 | IPR044837 | - | |
Sed10g1282 | 229 | Pfam | B3 DNA binding domain | 128 | 217 | IPR003340 | GO:0003677(InterPro) | |
Sed10g1282 | 229 | SMART | B3_2 | 127 | 218 | IPR003340 | GO:0003677(InterPro) | |
Sed10g1282 | 229 | CDD | B3_DNA | 125 | 216 | IPR003340 | GO:0003677(InterPro) | |
Sed10g1282 | 229 | MobiDBLite | consensus disorder prediction | 36 | 50 | - | - | |
Sed10g1282 | 229 | MobiDBLite | consensus disorder prediction | 36 | 56 | - | - | |
Sed10g1282 | 229 | Gene3D | - | 104 | 220 | IPR015300 | - | |
Sed10g1282 | 229 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 218 | IPR003340 | GO:0003677(InterPro) | |
Sed10g1282 | 229 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 218 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g1280 | Sed-Chr10:28389471 | Sed10g1282 | Sed-Chr10:28394295 | 2.10E-98 | dispersed | |
Sed10g1282 | Sed-Chr10:28394295 | Sed11g0972 | Sed-Chr11:24432551 | 2.90E-100 | dispersed | |
Sed10g1281 | Sed-Chr10:28390733 | Sed10g1282 | Sed-Chr10:28394295 | 1.80E-91 | tandem | |
Sed10g1282 | Sed-Chr10:28394295 | Sed10g1283 | Sed-Chr10:28394295 | 1.10E-128 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39791 | PF02362 | B3 | 2.00E-12 | CL0405 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1282 | - | - | - | 0.0 |