Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1296 ATGCCTTTCTTTCACAAGAGCGCTTCCAATTCTCGGCTTCAAAGCAAAGCAGCTCGCAATTCTGAATTTGCCCATGGCCGGCTGGACCCGCTTGCTCAGCGGCGGCTCACCCGGCAGAGGAAGCTCCGGCATCTTACGGACCGTGATGTCGGCTTTGAACACCCCCGATCATTTCCCGATTCTCCCGATTCATCGGCCAGACCCAAATCGCCTCTCGGGGGTTCTGAACGTTGGTCCTGCCCGGCTTCGCCCCAGCCTTTACCTCTCCCGGAGTTCCATCCGGTTCGGTTCTCAATCTCCGATTCTGGACAACCCCGTGTTGGATCGCCGATCGAAACTCCGCTCAGGAAGAGCGTTGATCATGCATCAACGAATCTGAGTAGAAGTTCGGGCAACAATCAAAGGCGAGCTGCTCTGGATTTAGCCTTGGAAGTCTCTAATGGCTTTACAAGCCCTAAACCTGTGAACTTAGAAAAATCCAATTTCAATAATGAGTTTGTTTTTAGTTGTTTGGATCAGCCTCCTTACAACAAATGCAGGGGATCCCCTATTCTGTCTGGTGTCGAAAGGAGTAACTACAATTCGACACAGAAGACTTCGGTATCAAGGAGTGCTCCTACCAGCATTTTACCCAGCCCTGTCGTTAGCCCGCGAAGATCGAATACAGGAGATCGGTTTGTTTTTGGTTTGACTCGTCATGAATGTCAGGAATCTCCTTCTAGTTGCTCTCCCAAAGTACCCTCCCTTAAATCTCCTCATAGTTCTCAACCTTCTCCTCTCCATAGCCCCACCGCTCTTAATTCGGTTAGCATTCCCCTCCGATTGTCTAATGATATGTCATTTCCTCTGCCTCTCAAGTTACAAAAGAATACTAGTGTAGACCATGTCAACGCTCATCCATTGCCTCTTCCTCCTCCATTAGTAGCCTCTTCACAATCTCTTCCTTCTAATGCTCATCATGTTATTGAGAAGCCATACATTTCATCTATGAAAGGTCAGTGGCAGAAAGGAAAGCTTATTGGTCGCGGTACATTCGGAAGTGTTTATCTCGCAACAAACAGAGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATACCTGATGACCCTAAATCTGCTGAATGTATAAAGCAGCTAGAGCAGGAAATTAAAGTTCTCAGTCAACTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGATGATCATTTCTATATATATTTGGAGTATGTTTTCCCTGGTTCGATAAATAAATTTGTCCGGGAACGTTGTGGAGCCATTACAGAATCTATAGTTCGCAATTTCACCCGTCATATTCTCTCTGGACTGGCTTACTTGCACAGCAAAAAAACAATCCACAGGGATATCAAAGGTGCAAACTTGCTAGTTGACTCATCAGGCGTTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTACGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCGGAGGTCATAAAGGCTGCTATGTTGAAAGATGCCAATCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTAGGTTGCACCATAATAGAAATGTTGAACGGAAAACCTCCATGGAGTGAGTTTGAAGGGCATCAAGTTATGTTCAAGGTGTTGAATAAAACCCCACCTATCCCAGAAAAGATATCTCGAGAAGGGAAAGACTTCCTCGAATCTTGCTTCCGAAGGAATCCAGCTGACAGACCAACAGCCATGAAACTCCTCGATCATCCTTTCTTAAAATCCTCAAATGACTCAAATGTTTTGATGATTCCCACGCCAGCATTTTCGACAATGAACGTTTTGGAAAAACTATTCAGTCCTCAGGCGCACCTTCATGCCAAAAGAGATCACGTGCAAAACTCTCTCGGAACATCAGCTGCAAATGATTATCTGCCATGCCGTAGCCCTTCAACGAACCTTCCAAGTAATTCTCCTGCCCGTGCCATAAACAACCATCACTTTGCTATCTCAAGGATTCATAAAATGGAAGTGCTACACCTCTGA 2049 45.29 MPFFHKSASNSRLQSKAARNSEFAHGRLDPLAQRRLTRQRKLRHLTDRDVGFEHPRSFPDSPDSSARPKSPLGGSERWSCPASPQPLPLPEFHPVRFSISDSGQPRVGSPIETPLRKSVDHASTNLSRSSGNNQRRAALDLALEVSNGFTSPKPVNLEKSNFNNEFVFSCLDQPPYNKCRGSPILSGVERSNYNSTQKTSVSRSAPTSILPSPVVSPRRSNTGDRFVFGLTRHECQESPSSCSPKVPSLKSPHSSQPSPLHSPTALNSVSIPLRLSNDMSFPLPLKLQKNTSVDHVNAHPLPLPPPLVASSQSLPSNAHHVIEKPYISSMKGQWQKGKLIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAECIKQLEQEIKVLSQLKHPNIVQYYGSEIIDDHFYIYLEYVFPGSINKFVRERCGAITESIVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAAMLKDANPDLALAVDIWSLGCTIIEMLNGKPPWSEFEGHQVMFKVLNKTPPIPEKISREGKDFLESCFRRNPADRPTAMKLLDHPFLKSSNDSNVLMIPTPAFSTMNVLEKLFSPQAHLHAKRDHVQNSLGTSAANDYLPCRSPSTNLPSNSPARAINNHHFAISRIHKMEVLHL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28472498 28479314 - Sed0023092.1 Sed10g1296 727800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1296 682 Pfam Protein kinase domain 335 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1296 682 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524(InterPro)
Sed10g1296 682 Gene3D Transferase(Phosphotransferase) domain 1 331 625 - -
Sed10g1296 682 MobiDBLite consensus disorder prediction 118 133 - -
Sed10g1296 682 MobiDBLite consensus disorder prediction 190 219 - -
Sed10g1296 682 FunFam Mitogen-activated protein kinase kinase kinase 5 331 632 - -
Sed10g1296 682 MobiDBLite consensus disorder prediction 1 133 - -
Sed10g1296 682 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 22 599 IPR050538 -
Sed10g1296 682 MobiDBLite consensus disorder prediction 28 56 - -
Sed10g1296 682 SMART serkin_6 334 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1296 682 SUPERFAMILY Protein kinase-like (PK-like) 329 616 IPR011009 -
Sed10g1296 682 ProSiteProfiles Protein kinase domain profile. 334 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1296 682 MobiDBLite consensus disorder prediction 235 265 - -
Sed10g1296 682 MobiDBLite consensus disorder prediction 190 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0376 Sed-Chr10:2263683 Sed10g1296 Sed-Chr10:28472498 8.50E-133 dispersed
Sed10g1296 Sed-Chr10:28472498 Sed13g0133 Sed-Chr13:862964 3.70E-90 dispersed
Sed10g1296 Sed-Chr10:28472498 Sed10g0375 Sed-Chr10:2263683 1.60E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79853 PF00069 Pkinase 2.50E-70 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1296 - - - 0.0