Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1313 | ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAAGCCCTTCCTGTTCCGATAACAATGGTGATGCTAGTAATTTCGAGTGCAATATTTGCTTGGATTTAGCTCAAGATCCTATTGTAACCCTGTGCGGTCATCTTTTTTGCTGGCCCTGTCTTTACAAGTGGCTGCAAATTCATTCCCATTCCCATGAATGCCCTGTTTGTAAAGCTATCATTGAAGACCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCCACGGACCCGAGATCCAAAACTATTCCCGGGATTAACATTCCTAACCGTCCTGCGGGGCAGAGACCTGAATCCGCAGGTCCTCCCTCCGAGCCCAATCCTTTTCCTCATAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTCGCCCCTATGGCGCCCGCCAGGTTTGGTAATTTCACATTGTCTGCTGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGTGCGGCTGCTAACTTTCCTTATGGATTTCCTAATATGTTTCATGGTAGCCACGGTCACGCCCATGGATACTATCACCATCTTCGTCAAGGTCAGCAGGATTACTATCTGAAGCGCCTGCTTTTGTTTATTTGTTTTTGTGTTCTTCTTGCTCTAGTCTGGCAATAG | 693 | 46.46 | MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEPNPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAANFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28769847 | 28772283 | - | Sed0019455.1 | Sed10g1313 | 727817 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1313 | 230 | SMART | ring_2 | 30 | 70 | IPR001841 | - | |
Sed10g1313 | 230 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 70 | IPR018957 | GO:0046872(InterPro) | |
Sed10g1313 | 230 | CDD | RING-HC_AtRMA-like | 28 | 72 | - | - | |
Sed10g1313 | 230 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 9 | 218 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Sed10g1313 | 230 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed10g1313 | 230 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
Sed10g1313 | 230 | MobiDBLite | consensus disorder prediction | 84 | 121 | - | - | |
Sed10g1313 | 230 | SUPERFAMILY | RING/U-box | 26 | 83 | - | - | |
Sed10g1313 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 84 | IPR013083 | - | |
Sed10g1313 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 71 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2592 | Sed-Chr4:38428933 | Sed10g1313 | Sed-Chr10:28769847 | 2.30E-21 | dispersed | |
Sed10g1313 | Sed-Chr10:28769847 | Sed12g1275 | Sed-Chr12:9287199 | 7.60E-24 | dispersed | |
Sed10g0427 | Sed-Chr10:2673446 | Sed10g1313 | Sed-Chr10:28769847 | 9.20E-70 | transposed | |
Sed10g1313 | Sed-Chr10:28769847 | Sed11g1002 | Sed-Chr11:25145519 | 2.60E-112 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1313 | K10666 | - | csv:101221027 | 438.728 |