Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1313 ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAAGCCCTTCCTGTTCCGATAACAATGGTGATGCTAGTAATTTCGAGTGCAATATTTGCTTGGATTTAGCTCAAGATCCTATTGTAACCCTGTGCGGTCATCTTTTTTGCTGGCCCTGTCTTTACAAGTGGCTGCAAATTCATTCCCATTCCCATGAATGCCCTGTTTGTAAAGCTATCATTGAAGACCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCCACGGACCCGAGATCCAAAACTATTCCCGGGATTAACATTCCTAACCGTCCTGCGGGGCAGAGACCTGAATCCGCAGGTCCTCCCTCCGAGCCCAATCCTTTTCCTCATAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTCGCCCCTATGGCGCCCGCCAGGTTTGGTAATTTCACATTGTCTGCTGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGTGCGGCTGCTAACTTTCCTTATGGATTTCCTAATATGTTTCATGGTAGCCACGGTCACGCCCATGGATACTATCACCATCTTCGTCAAGGTCAGCAGGATTACTATCTGAAGCGCCTGCTTTTGTTTATTTGTTTTTGTGTTCTTCTTGCTCTAGTCTGGCAATAG 693 46.46 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEPNPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAANFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28769847 28772283 - Sed0019455.1 Sed10g1313 727817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1313 230 SMART ring_2 30 70 IPR001841 -
Sed10g1313 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Sed10g1313 230 CDD RING-HC_AtRMA-like 28 72 - -
Sed10g1313 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 218 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Sed10g1313 230 MobiDBLite consensus disorder prediction 1 20 - -
Sed10g1313 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Sed10g1313 230 MobiDBLite consensus disorder prediction 84 121 - -
Sed10g1313 230 SUPERFAMILY RING/U-box 26 83 - -
Sed10g1313 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Sed10g1313 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2592 Sed-Chr4:38428933 Sed10g1313 Sed-Chr10:28769847 2.30E-21 dispersed
Sed10g1313 Sed-Chr10:28769847 Sed12g1275 Sed-Chr12:9287199 7.60E-24 dispersed
Sed10g0427 Sed-Chr10:2673446 Sed10g1313 Sed-Chr10:28769847 9.20E-70 transposed
Sed10g1313 Sed-Chr10:28769847 Sed11g1002 Sed-Chr11:25145519 2.60E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1313 K10666 - csv:101221027 438.728