Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1328 ATGACTTCCGACGGCGCCACCTCCGCCTCCAATTCCCGCCGGAAGCCGTCCTGGAGGGAGCGGGAGAACAACCGCACCAGGGAGCGCCGGCGGAGAGCCATTGCCGCTAAGATTTACTCCGGCCTTAGGGCTCAGGGCAATTTCAATCTGCCTAAACATTGCGACAACAACGAGGTCCTTAAAGCTCTCTGTGCTGAAGCTGGCTGGACCGTCAAGGATGATGGAACCACCTATCGGAAGGGATGTAAACGGCCTCCAATTGACGTTGTTGGCACTTTCACCAAAGTCACTCCCTATTCTTCCCAGAATCCAAGCCCATTGTCTTCTTCTTTCCCTAGCCCTATGGCATCCTACCAAGTCAGCCCCTCCTCTTCCTCCTTCCCGAGCCCGTCCCGGTTCGATGCCAATAATCCTTCGAATCTCATTCCGTATCTTCGCCAAGCGATCCCCATATCCCTTCCTGCTCTTAGAATCTCAAACAGTGCCCCTGTGACCCCTCCGCTTTCATCCCCACCCTCAAGGACTCCACAGCCATTCCCCAATTGGGAGATCACTGCTAAAGAATCCTTGTCCTCCTTGAATTACCCTTTCTTTGCAGTGTCTGCCCCGGCTAGCCCAACTCGCCATCAGCTGCATACTCCTGCCACCATCCATGAATGTGACGAGTCTGAATCATCCACCAACGATTCCACTCAATGGGCACGTCTCCACGCCTATGCTCCTTTCTCATCGACAATGCCAACGTCTCCCACATTCAACCTTATGAAACCTTCTGACCAGCATGTTCTGCACAGTGGTTTCGTCGCAGAAAGCGGAAGAGGAAACGAATTCGAGTTCTTGGGCTGCAAGGTTAAGCCATGGGAAGGGGAGAAGATCCACGAAGTTGGATTGGAGGATTTAGAGCTCACACTGGGTAGCAATAAAGCTTGA 930 53.12 MTSDGATSASNSRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVKDDGTTYRKGCKRPPIDVVGTFTKVTPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRFDANNPSNLIPYLRQAIPISLPALRISNSAPVTPPLSSPPSRTPQPFPNWEITAKESLSSLNYPFFAVSAPASPTRHQLHTPATIHECDESESSTNDSTQWARLHAYAPFSSTMPTSPTFNLMKPSDQHVLHSGFVAESGRGNEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSNKA 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28915984 28917737 + Sed0002528.1 Sed10g1328 727832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1328 309 Pfam BES1/BZR1 plant transcription factor, N-terminal 12 136 IPR008540 -
Sed10g1328 309 MobiDBLite consensus disorder prediction 98 132 - -
Sed10g1328 309 MobiDBLite consensus disorder prediction 14 30 - -
Sed10g1328 309 MobiDBLite consensus disorder prediction 1 30 - -
Sed10g1328 309 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 12 308 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1328 Sed-Chr10:28915984 Sed14g1094 Sed-Chr14:20448004 1.90E-86 dispersed
Sed10g1328 Sed-Chr10:28915984 Sed01g2176 Sed-Chr1:16420213 1.70E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39806 PF05687 BES1_N 3.60E-60 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1328 K14503 - csv:101219853 486.878