Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1335 ATGGAATCGGAATTAGGGAACAATTCTCCAACAGCAGCGGCTTCGCTGAGATTCGAGATCGAGGACATCGACGCGGCGGCTCCGGCGAAGAAGAAGCGGAATCTCCCGGGGATGCCAGATCCGAGGGCGGAGGTGGTAGCTCTGTCGCCGAAATCGCTTCTAGCGACGAATCGGTTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTCCACCGGCGCGGCCACAACCTGCCGTGGAAGCTCCGGCAGCGGACGAGCGGCGAGGTTCGGAAGCGAGTGTACGTGTGTCCGGAGCCATCGTGCGTGCATCACAATCCGGTGAGGGCGCTCGGCGATCTCACCGGAATAAAAAAACACTTCTCGAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCGGTTCAATCGGATTGGAAGGCGCATGTGAAAACCTGTGGAACCAGAGAGTATAAATGCGATTGCGGAACTCTGTTTTCTAGGAGGGATAGTTTCACTACGCATCGGGCTTTTTGCGATGCTCTCGTCGCTGCGGCAGCGGTTGCTTCTTCGCCGCCTGCGCCGCCGCTCACGCCGTCCGCCACCGTGCTGTCACCGGTTTTGTCCATCCTAAGCTCAGAACCACCGGAAAATCCCATCGGACATCTGCCATTAACACCGGCGATCACAAGCTTAGCCTCCAACATGGCATCCCATACAACCAATTCAACAAACGGCACTGGCATTGGCCGCGAAACAAGCGTTTTCGCCGGCGTATTTACATCTCCTCCCATTGTTGGCGGCCCCCATCAATTCACCACCTCATGCTGCCCATCGGACGGCGTCGTTGAGCCCGCATCGCTCTCTCTCTTCCTCTCCTGCCGAGCCTCACACTACTCGCCATCGCCCCAGCCGGCCACCATGTCTGCCACTGCCCTCCTGCAGAAGGCTGCACTAATGGGGGTCACCACCTCCACCACGGCTGCAGCCACGATGGCTGGACTCGGACTTGGATACGGCAATGAGCCCATGACACGGGACCTCCTTGGGCTCGGCGTGGGCGGCAGATACTCTATTTTTACATCGTTTGGTGGTGGCTGTGACGTTGAAGCTGCTTCACCTTACGGTGGCGACGAGACCAATGGTTTGTGA 1164 57.99 MESELGNNSPTAAASLRFEIEDIDAAAPAKKKRNLPGMPDPRAEVVALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSGEVRKRVYVCPEPSCVHHNPVRALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHVKTCGTREYKCDCGTLFSRRDSFTTHRAFCDALVAAAAVASSPPAPPLTPSATVLSPVLSILSSEPPENPIGHLPLTPAITSLASNMASHTTNSTNGTGIGRETSVFAGVFTSPPIVGGPHQFTTSCCPSDGVVEPASLSLFLSCRASHYSPSPQPATMSATALLQKAALMGVTTSTTAAATMAGLGLGYGNEPMTRDLLGLGVGGRYSIFTSFGGGCDVEAASPYGGDETNGL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28982201 28986751 - Sed0007834.1 Sed10g1335 727839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1335 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Sed10g1335 387 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Sed10g1335 387 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Sed10g1335 387 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 330 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed10g1335 387 FunFam protein indeterminate-domain 12-like 38 106 - -
Sed10g1335 387 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 195 - -
Sed10g1335 387 Gene3D Classic Zinc Finger 55 82 - -
Sed10g1335 387 Pfam Zinc-finger of C2H2 type 59 81 IPR013087 -
Sed10g1335 387 Gene3D Classic Zinc Finger 114 192 - -
Sed10g1335 387 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Sed10g1335 387 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Sed10g1335 387 SMART c2h2final6 100 130 IPR013087 -
Sed10g1335 387 SMART c2h2final6 59 81 IPR013087 -
Sed10g1335 387 SMART c2h2final6 135 155 IPR013087 -
Sed10g1335 387 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1335 Sed-Chr10:28982201 Sed14g1101 Sed-Chr14:20503976 3.20E-83 dispersed
Sed10g1335 Sed-Chr10:28982201 Sed13g1670 Sed-Chr13:21730189 6.90E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39807 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1335 K25869 - csv:101217471 500.36