Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1377 ATGGCTACGCCAGTTATGCCTCCAAATGGGGTTTGCTCCGAAGGGAAGCATTACTATTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCCATCAAGCCTATTGGTCGAGGGGCATATGGTATCGTGTGTTCTTCTGTGAATAGGGAGACCAATGAGAAGGTTGCGATAAAGAGGATACATAATGCGTTTGAGAATCGTATCGATGCTCTCCGGACTTTGCGTGAATTGAAGCTCCTTAGGCATCTTCGCCACGAAAATGTGATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGCTTTAAAGATGTTTATTTGGTTTATGAACTGATGGATACTGATCTACATCAGATTATTAAGTCTTCTCAGACTCTTTCCAATGATCACTGCCAATATTTCCTCTTTCAGTTGCTCAGAGGCTTAAAATATCTGCACTCTGCAAACATTCTACATCGAGACTTGAAGCCTGGGAACCTCCTTGTCAATGCAAACTGTGATCTCAAGATATGTGATTTCGGGTTAGCACGTACCAGCAACGGCAAGAACCAATTTATGACAGAGTATGTTGTAACTCGCTGGTATCGAGCCCCAGAACTGTTGCTTTGCTGTGAGAATTATGGGACATCAATTGATGTGTGGTCTGTAGGATGCATCTTTGCCGAGCTTCTCGGTAGGAAACCTATCTTCCCCGGTACCGAATGTTTGAATCAGCTCAAATTGATAATTAATATACTGGGTAGCCAGAGAGAGGAAGATCTTGAGTTCATAGACAATCAAAAGGCAAGGAGGTACATAAAATCCCTGCCATACTCTCCTGGGGCTCCACTTTCCCGTCTTTATCCGACTGCTCACCCTCTTGCAATCGATCTGCTACAAAAGATGCTTGTCTTCGACCCATCAAAGAGGATTAGTGTCACTGAAGCATTGCAACATCCTTACATGTCCCCACTGTATGATCCAAACAGCAATCCTCCAGCTCAGGTACCGATCGATCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTTGAAAGAAATGCTTCATTACCACCCTGAAGGTCTGGAAGAACACGCAGAAATTACATGTTTCCACCCCGAACCTACAACGAGTAGCACCGTGGTGTTTACTTGA 1161 43.41 MATPVMPPNGVCSEGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNQKARRYIKSLPYSPGAPLSRLYPTAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMLKEMLHYHPEGLEEHAEITCFHPEPTTSSTVVFT 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29667852 29677279 + Sed0021539.1 Sed10g1377 727881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1377 386 FunFam Mitogen-activated protein kinase 18 126 - -
Sed10g1377 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Sed10g1377 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1377 386 CDD STKc_TEY_MAPK 26 361 - -
Sed10g1377 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1377 386 Gene3D Phosphorylase Kinase; domain 1 19 353 - -
Sed10g1377 386 FunFam Mitogen-activated protein kinase 116 345 - -
Sed10g1377 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524(InterPro)
Sed10g1377 386 SMART serkin_6 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1377 386 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1377 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 357 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed10g1377 386 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Sed10g1377 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1662 Sed-Chr7:14213741 Sed10g1377 Sed-Chr10:29667852 1.90E-136 dispersed
Sed09g0034 Sed-Chr9:288220 Sed10g1377 Sed-Chr10:29667852 4.50E-119 dispersed
Sed10g1377 Sed-Chr10:29667852 Sed13g1026 Sed-Chr13:8384476 1.40E-166 dispersed
Sed10g1377 Sed-Chr10:29667852 Sed11g1055 Sed-Chr11:25856287 1.80E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79854 PF00069 Pkinase 5.80E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1377 K20535 - csv:101213478 743.421