Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1388 ATGGATTCTCCACCGTCCAAGAGCTGGAGCATCCACACCCGCCCGGACATCATCCACAAGTACAAGATCCTCGACCGCGTCGGATCCGGCGCATACTCCGACGTCCACCGCGCCGTGCGCCTCTCCGACGGCGTCACCGTCGCCTTGAAGGAGATCCACGATTACCAGTCCGCCTTCCGCGAGATCGAAGCCCTCCAGATCCTTCAAGGTTCGGCCAACGTCGTCGCCCTGCACGAGTACTTTTGGCGCGACGATGAGGATGCCGTCCTCGTTCTCGAGTTCTTGACTACGGATTTGGCCTCTGTCATAGCCGACGCCAAGAAGCGAGGCCGGATTGCGGCCGGGGAGTTGAAGCGGTGGATGATCCAGATCTTGAGTGGCCTCGATGCTTGCCACAGGAATATGATCGTGCATAGGGATTTGAAACCTTGCAATTTGTTGATCTCCGATGATGGCGTGCTTAAGATTGCCGATTTTGGACAGGCAAGAATACTAATGGAGCCTGAATATGATGAATCCACACGAGAGATGAACTTTTCAGATCAAGTACCTACGTCTCAGCCATCTGCAAAATTTTCGGGAACAGAAAATTTGGTTCTAGAATGTAATAGGACTGATGGGCAAGAACCAATTAGCAAAGAGGAATATTTTAGAGTATTAGAGGATCTAAAAGCAAAAAATTCAGCAAATGATTCTGATAAGGAAACATATACTTATGATGGAGATGCATCTTGCTTAGCAACTTGTACCACCAGTGATCTTGAAGATGATCCATTTAAAGGTTCATCATATACTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGGCAGGGTTCTCTCACTTCATGTGTTGGTACTCGCTGGTTCAGGGCACCTGAATTACTCTATGGCTCCACGAACTACGGTTTGGAGATTGACTTATGGTCATTGGGGTGCATTTTTGCAGAACTTTTTACATTGGAACCACTTTTTCCAGGAACTGCTGAAATTGATCAAATGAGTAGAATTTTTACTACTCTAGGCAACTTGACTGAAGATTCTTGGCCAGGCTGTTCCAAACTTCCTGATTTCCAAATCATATCATTCAACAACATAGAGAAGCCAATTGGCCTAGAAACTTGTCTTCCCAACTGTTCTCCTGATGAAATTTCTATCATTAAAAGACTTCTTTGCTACAACCCGGCTAATCGAGGGACCGCTATGGAATTGCTACAAGACAAATATTTCACTGATGAGCCACTTCCTGTTCCCTTGTCTGAGCTTCATGTTCCCTCAACTAGAAGTGGACAGGATGAGGATTCTCCTGGAGGATGGTACAACGGCGATGAGTCGGATTCTGATATGGATGAACTCGGCCCCTTGAATGTTACCACCAGTGCCACTGGTTATTCCGTACAATTTGATTGA 1410 46.74 MDSPPSKSWSIHTRPDIIHKYKILDRVGSGAYSDVHRAVRLSDGVTVALKEIHDYQSAFREIEALQILQGSANVVALHEYFWRDDEDAVLVLEFLTTDLASVIADAKKRGRIAAGELKRWMIQILSGLDACHRNMIVHRDLKPCNLLISDDGVLKIADFGQARILMEPEYDESTREMNFSDQVPTSQPSAKFSGTENLVLECNRTDGQEPISKEEYFRVLEDLKAKNSANDSDKETYTYDGDASCLATCTTSDLEDDPFKGSSYTYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELFTLEPLFPGTAEIDQMSRIFTTLGNLTEDSWPGCSKLPDFQIISFNNIEKPIGLETCLPNCSPDEISIIKRLLCYNPANRGTAMELLQDKYFTDEPLPVPLSELHVPSTRSGQDEDSPGGWYNGDESDSDMDELGPLNVTTSATGYSVQFD 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29779586 29782834 + Sed0025602.2 Sed10g1388 727892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1388 469 Gene3D Transferase(Phosphotransferase) domain 1 219 417 - -
Sed10g1388 469 Gene3D Transferase(Phosphotransferase) domain 1 108 199 - -
Sed10g1388 469 MobiDBLite consensus disorder prediction 420 469 - -
Sed10g1388 469 Pfam Protein kinase domain 21 170 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1388 469 Pfam Protein kinase domain 279 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1388 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1388 469 Gene3D Phosphorylase Kinase; domain 1 13 107 - -
Sed10g1388 469 SUPERFAMILY Protein kinase-like (PK-like) 8 426 IPR011009 -
Sed10g1388 469 MobiDBLite consensus disorder prediction 452 469 - -
Sed10g1388 469 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524(InterPro)
Sed10g1388 469 FunFam Cyclin-dependent kinase F-1 12 106 - -
Sed10g1388 469 SMART serkin_6 21 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1388 469 ProSiteProfiles Protein kinase domain profile. 21 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1388 469 PANTHER CELL DIVISION PROTEIN KINASE 20 410 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1388 Sed-Chr10:29779586 Sed08g0384 Sed-Chr8:2325240 2.20E-38 dispersed
Sed10g1387 Sed-Chr10:29779586 Sed10g1388 Sed-Chr10:29779586 2.90E-280 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79856 PF00069 Pkinase 8.50E-32 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1388 - - - 0.0