Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1393 ATGTCAACTCCTACCCCGGCGCCGTCCTCTCCGCCGGCGACCAACACGACCTCTCCCCCGCCGGTAACCCCCACCGCTCCGCCGCCGACCCCTTCTCCTCCGCCTTCCGCTGCTACCCCGCCCACCTCCGTCCCACCTCCGCCCACCCCGTCGCCGCCGCCGCCGGCTACTCCCCTCCCCCCTCCACCCACTGCCTCTCCCTCCCCACCGGCTTCCTCTCCTCCGCCGCGCTCTCCGCCATCCCCGCCTTCTACTGCCTCTACTCCTCCGCCGCCGCCGTCTTCTACCAGCCCCCCGTCGCCGCCGATTTCACGCTCTCCGCCTCCTCCACCTTCTCGTACGCCGTCCACTCCGTCGAGAAGTCCTCCGCCTCCATCAACGCCGTCGTCATCGCCGTCGTCATCCTCTAATAACTCAACTGGACTTGTCGTCGGAATCGCAATCGGTGGCGTCATAATCGTTCTTCTGTTTAGTATTTTGTGCGTTTGTTGCACGAAGAAGAGGAGAAGACGACGCGACGATGAAGGATTCTATCCTCCCCCTCCGCCTCAACCTAAAGTTGACCCTTATGGTAATCACCAGCAATGGCAGCACAATGCTCCTCCACCGCCCGACCCTATCATTGGGATGGCGCCTAAGCCGTCTCCTCCTCCGGCTAACGCATCCCGACCCCCGCAATCCCCGACCGGGGTTCGTCCTCCGCCTCCACAGCTCTATATGAGTAGCAGTGGAGGTTCGGGCTCTGTCTACTCTGGGCCTGAGAATTCGCTTCCTCCGCCCCCACCACCGCCTCATATTGCCTTTGGTTTCTCTAAGAGTACATTTACTTATGACGAATTGGCTATGGCCACGGATGGATTTTCGGATGCCAACCTCCTCGGGCAAGGTGGATTTGGTTATGTGCATAGAGGGGTTCTTCCTAATGGTAAGGAAGTTGCGGTGAAGCAGTTGAAAGTTGGGAGCGGGCAGGGCGAAAGAGAATTTCAGGCCGAAGTGGATATTATCAGCCGAGTTCATCATAAGCATCTTGTTTCTTTGGTTGGATATTGCATTGCTGGGTCTCAAAGATTGCTTGTTTATGAATTTGTTCCAAATAATACCTTGGAGTTTCATTTACATGGTATAGGGCGACCGACAATGGATTGGCAGATGAGACTTAGAATCGCTTTAGGATCAGCAAAAGGACTTGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGTGATATTAAAGCCGCTAACATACTGTTGGATTTCAAGTTTGAAGTAAAGGTTGCTGATTTTGGACTTGCGAAGTTTTCTTCTGATGTCAATACCCATGTATCGACTCGTGTGATGGGTACTTTCGGGTATCTTGCACCAGAATATGCCTCAACTGGCAAACTTACTGAGAAATCAGATGTCTTCTCATTTGGGGTTATGCTTTTGGAGTTGATCACCGGTCGTCGACCAGTCGATATGAATAATACGTTCATGGAAGATAGTCTTGTAGACTGGGCTAGGCCATTATTGAATCGAGCTCTAGAAGATGGAAATTTTGATGCTTTGATCGATCCAAGGATTCAGAACAACTACAACCCCAACGAGATGGCTCGTATGGTTGAGTGTGCTGCAGCCTGTGTGCGACATTCTGCAAGACGTCGACCCCGAATGAGCCAGGTAGTACGCGCACTTGAAGGAGACGCATCACTATCGGATCTCAACGATGGAGTCGGACCCGGGCAGAGCTCAATGTATAGCTCTCACGGAAGCTCAGACTATGACACCCATCAGTACAATGAGGACTTGAGGAAGTTCAAGAAAATGGCATTAGGAAGCATGGAGTATGGAGCTAGCAGCGAATACAGCAGACCGACGAGCGAGTACGGGCTGTATCCTTCGGGGTCGAGCAGCGAAGGGCAAACCACAAGAGAAATGGAGATTGGAACAGTGAAGAAAGAGAGTGGAGTTCCTGAAGCATAA 1968 52.85 MSTPTPAPSSPPATNTTSPPPVTPTAPPPTPSPPPSAATPPTSVPPPPTPSPPPPATPLPPPPTASPSPPASSPPPRSPPSPPSTASTPPPPPSSTSPPSPPISRSPPPPPSRTPSTPSRSPPPPSTPSSSPSSSSNNSTGLVVGIAIGGVIIVLLFSILCVCCTKKRRRRRDDEGFYPPPPPQPKVDPYGNHQQWQHNAPPPPDPIIGMAPKPSPPPANASRPPQSPTGVRPPPPQLYMSSSGGSGSVYSGPENSLPPPPPPPHIAFGFSKSTFTYDELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKVGSGQGEREFQAEVDIISRVHHKHLVSLVGYCIAGSQRLLVYEFVPNNTLEFHLHGIGRPTMDWQMRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEVKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASTGKLTEKSDVFSFGVMLLELITGRRPVDMNNTFMEDSLVDWARPLLNRALEDGNFDALIDPRIQNNYNPNEMARMVECAAACVRHSARRRPRMSQVVRALEGDASLSDLNDGVGPGQSSMYSSHGSSDYDTHQYNEDLRKFKKMALGSMEYGASSEYSRPTSEYGLYPSGSSSEGQTTREMEIGTVKKESGVPEA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29843960 29847590 - Sed0016371.1 Sed10g1393 727897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1393 655 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524(InterPro)
Sed10g1393 655 SMART serkin_6 287 523 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1393 655 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 108 604 IPR047117 -
Sed10g1393 655 MobiDBLite consensus disorder prediction 571 589 - -
Sed10g1393 655 FunFam proline-rich receptor-like protein kinase PERK1 265 362 - -
Sed10g1393 655 MobiDBLite consensus disorder prediction 169 267 - -
Sed10g1393 655 Gene3D Phosphorylase Kinase; domain 1 265 362 - -
Sed10g1393 655 MobiDBLite consensus disorder prediction 565 591 - -
Sed10g1393 655 MobiDBLite consensus disorder prediction 641 655 - -
Sed10g1393 655 MobiDBLite consensus disorder prediction 614 640 - -
Sed10g1393 655 SUPERFAMILY Protein kinase-like (PK-like) 262 560 IPR011009 -
Sed10g1393 655 MobiDBLite consensus disorder prediction 239 253 - -
Sed10g1393 655 ProSiteProfiles Protein kinase domain profile. 287 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1393 655 Gene3D Transferase(Phosphotransferase) domain 1 363 571 - -
Sed10g1393 655 PRINTS Proline rich extensin signature 4 20 - -
Sed10g1393 655 PRINTS Proline rich extensin signature 23 40 - -
Sed10g1393 655 PRINTS Proline rich extensin signature 49 74 - -
Sed10g1393 655 MobiDBLite consensus disorder prediction 1 130 - -
Sed10g1393 655 MobiDBLite consensus disorder prediction 1 140 - -
Sed10g1393 655 FunFam Proline-rich receptor-like protein kinase PERK1 363 571 - -
Sed10g1393 655 Pfam Protein tyrosine and serine/threonine kinase 292 560 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1393 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1393 655 CDD STKc_IRAK 293 562 - -
Sed10g1393 655 MobiDBLite consensus disorder prediction 612 655 - -
Sed10g1393 655 MobiDBLite consensus disorder prediction 199 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1393 Sed-Chr10:29843960 Sed13g0992 Sed-Chr13:7764733 2.50E-152 dispersed
Sed14g1520 Sed-Chr14:23471039 Sed10g1393 Sed-Chr10:29843960 1.70E-74 dispersed
Sed14g1521 Sed-Chr14:23471039 Sed10g1393 Sed-Chr10:29843960 1.70E-74 dispersed
Sed12g1390 Sed-Chr12:11201911 Sed10g1393 Sed-Chr10:29843960 6.00E-22 transposed
Sed10g1393 Sed-Chr10:29843960 Sed11g0064 Sed-Chr11:603717 9.60E-213 wgd
Sed10g1393 Sed-Chr10:29843960 Sed12g2433 Sed-Chr12:34021080 5.10E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79857 PF07714 PK_Tyr_Ser-Thr 2.30E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1393 - - - 0.0