Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1395 ATGGAAACCAACCACCCAAACGACGCCGTTTCGCCCTTCGTCACCAAGACTTACCAGATGGTCAACGATCCCACCACCGACGATTTAATCGCTTGGGGCAACGCCGACAACACCTTCGTCGTCGCCGATCCTTTGGAGCTTTCCCGCCGAATCCTTCCCTCTTATTTCAAACACAACAATTTCTCCAGTTTTGTCCGTCAACTCAACACTTATGGATTCAAGAAGGTGGATCCAGACAAATGGGAATTTGCAAGCCAATGGTTTCTGAGAGGTCAAAAGAATTTACTGAAGAACATTTCGAGAAGAAAATACAGTCGAAATTCATCGAATAATGTTCAAGTGAAATGTGAAGAAGACGATGGGGAATTGGCAATGGAAATTGCGAAGCTGAAGGAAGAACAGAGAGCTTTAGATATCGAACTTGAATCGATGAACAAACGAATCGAAGCCACTGAAAAACGCCCACAGCAAATGATGGCGTTTTTGTATAAGATTATGGAAAACCCAGAGATTTTTCCCGGAATGATGCTGCAGAACCGCCGCTCACGGCGGCAGCTGCCGGATAAGCGGCGGAGATTTGTGATGCCGCCGCCTAGTCCGGTCAAAATCGAGAAGGCCGCGGCGGAGGAATCTTCGCCGGAGACCGGTGTTTTTGCCGATAACGCTGCCCTGTCGTCGCCGGAATCGCCCTTGTGTTGGAGCACAGCGAGTCCGTTGACGACGGATTCCGGCAGCGGATTTGGCGACTACCTAACGGTATCTCCGCCGGAGAGTAGTTTATCGGTGTACGGGTGCGGCGGCGGCCGGGATAGTTATTTGGCGGAGTCGGTGGCCGGAGAGGAACCGAGTCCGCCGCCTTATCCGTTTTCGTTGTTTAGTGGTGGCTTTTAG 891 50.95 METNHPNDAVSPFVTKTYQMVNDPTTDDLIAWGNADNTFVVADPLELSRRILPSYFKHNNFSSFVRQLNTYGFKKVDPDKWEFASQWFLRGQKNLLKNISRRKYSRNSSNNVQVKCEEDDGELAMEIAKLKEEQRALDIELESMNKRIEATEKRPQQMMAFLYKIMENPEIFPGMMLQNRRSRRQLPDKRRRFVMPPPSPVKIEKAAAEESSPETGVFADNAALSSPESPLCWSTASPLTTDSGSGFGDYLTVSPPESSLSVYGCGGGRDSYLAESVAGEEPSPPPYPFSLFSGGF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29966654 29968149 - Sed0019165.1 Sed10g1395 727899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1395 296 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1395 296 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1395 296 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1395 296 SMART hsfneu3 9 102 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1395 296 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1395 296 SUPERFAMILY Winged helix DNA-binding domain 10 102 IPR036390 -
Sed10g1395 296 Gene3D - 5 103 IPR036388 -
Sed10g1395 296 FunFam Heat stress transcription factor B-4 5 103 - -
Sed10g1395 296 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 224 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Sed10g1395 296 Coils Coil 127 154 - -
Sed10g1395 296 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1395 K09419 - - csv:101211247 399.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0764 Sed-Chr8:5790982 Sed10g1395 Sed-Chr10:29966654 9.10E-64 dispersed
Sed10g1395 Sed-Chr10:29966654 Sed12g0970 Sed-Chr12:6078383 1.80E-33 dispersed
Sed10g1395 Sed-Chr10:29966654 Sed02g1342 Sed-Chr2:49760525 8.60E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g705 Blo02g00985 . Bda06g01262 Bda08g00638 . . . . Cmo06g00645 Cmo16g01225 . . . . Sed10g1395 Cpe14g00974 . Bhi11g00015 Tan08g0173 Cmetu05g1605 . . Mch10g1679 . Cla10g00139 Cam10g0138 Cec10g0148 Cco10g0148 Clacu10g0142 Cmu10g0989 Cre10g0400 . . . . Lsi07g01178 . . Cme06g02455 . . . . . . Bma05g00705 . . . . Cma06g00639 Cma16g01175 Car06g00570 Car16g01108 . . . . . . . . . . . . . . . . . Csa03g00150 Chy06g02159 .
Vvi11g344 Blo01g00509 . Bda01g02063 . . . . . Cmo10g00652 Cmo11g00611 Cma05g01337 . Car05g01251 . Sed08g0764 Cpe04g01133 Cpe18g00437 Bhi02g01124 Tan09g1294 Cmetu02g1321 . Hepe09g0754 . . Cla11g00224 . Cec11g0257 Cco11g0267 Clacu11g0387 Cmu11g0236 Cre11g0734 . . Cone4ag0727 . Lsi06g00879 Csa02g00128 Chy05g01367 Cme02g01348 Blo08g00287 . . . Bpe08g00470 . Bma01g00185 . Sed10g1395 Cmo05g01345 . Cma10g00613 Cma11g00606 Car10g00567 Car11g00485 Cpe11g01109 . Bhi06g02028 Tan08g0173 Cmetu05g1605 . Hepe08g2589 . . Cla06g00845 Cam06g0911 Cec06g0919 Cco06g0947 Clacu06g0912 Cmu06g0879 Cre06g1660 Lsi11g00263 Csa01g01715 Chy02g01878 Cme05g01974
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001930 2 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39813 PF00447 HSF_DNA-bind 1.90E-30 CL0123 Sed TF