Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1400 ATGAAGAGCAATACCCTTTTCACCATTCCTCTTTTCCTTTTCTTCTTCGCCGTTCTTTTGTGCAAGGCTTCTTCCGATGACCTTCTCCCACTTTCCGGCCATGGCGGCGGCGCCGGCGGAGGACTCACCGACGCCGAAGCTCACTACATTCGCCAACGGCAGCTTCTTTACTACAGAGATGAGTTCGGCGACCGTGGTGAAAATGTCACCGTCGATCCTAAGCTTGTCTTTGAAAACGACAGGATCAGGAATGCTTACATAGCCTTACAAGCTTGGAAGCAAGCCATTCTCTCCGATCCTTTGAATCTCACTCGCAATTGGGTTGGATCTGATGTTTGTAGCTACGAAGGGGTTTTCTGTGCTCTGGCGCCGGATAATTCCTCCGTCCGTACTGTTTCTGGGATCGATCTCAACCACGGCGACATTGCCGGCTACTTGCCGGAGGAGCTTGGCCTGCTTGTTGATCTTGCATTGTTCCATATCAACTCCAATCGCTTCTGCGGTACTGTTCCTCACAAGTTTAAGCACTTGAAGTTGCTGTTTGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAGCCTTCCCTCGGGTGGTTCTCCAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGATTTAACGAGTTTGAAGGGACTGTACCGAAGGAGCTTTTTGATAAGGATTTGGACGCTATTTTCATCAACCACAACAGATTCCGGTTTGAGTTGCCGGAGAATTTTGGGAACTCGCCGGTTTCGGTGATTGTTCTTGCGAACAACAAATTTCACGGCTGTGTTCCGGGGAGCATTGGGAATATGACGAGGTTGAATGAGATTATTATGATGAATAATGGGTTTCGGTCGTGTTTGCCGGCGGAGATTGGGTTGCTGAAGAATCTGACGGTGTTGGATTTAAGTTTTAATGAGTTTTTTGGGAAGTTGCCGGAGACGGTCGGCGGGATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGATTCCGGAGAATATTTGTAAGTTGCCGAATCTGCAGAACTTTACTTATTCGTATAATTTCTTCACCGGAGAAGCGCCGTCGTGTTTGGCGTTGCCGGACTTTGATGATCGGAGGAATTGTATACCGGAGCGGCCGGTTCAGCGGTCTGAGAAGCAATGTAAGTCGTTCTTGTCGAAACCTTTGGATTGTAGTTCTTTTGGATGTCATTCTTCCTTTGTTGCGCCGTCGCCACCGGTGGTGGTGGTGCCGTCCCCGCCACCTGTCGTTGTTCCAACTCCTTCGCCGTCGCCACCTGTTCACGCTTCACACCCTATTTACCGGCCACGACCTCCGCCACCGCCGGTCCCCTCTCCCTCTCCCCCTCCTCCGCCGCCTGTTTACTCTCCTCCGCCTCCTCCACCTTCCCCACCGCCCCCACCTCCGCCTGTTTACTCTCCACCCCCACCTCCTCCATCTCCTCCGCCGCCTTCTCCGCCTCCTCCACCCCCACCAGTTTACTCCCCACCCCCACCACCACCATCTCCACCGCCACCCTCACCCCCACCATCTCCAGTTTACTCTCCACCACCGCCATCTCCCCCTCCACCATCGCCTCCACCACCGTCCCCTGTTTATTGTGTCCGACCTTCACCACCACCGCCACCACCAAACTCTCCCCCACCTCCTCCTCCATTGTTCTCCCCACCTCCACCTGTTTATTATTACAATTCACCGCCACCACCCAACTCTCCACCACCGCCACCAATGTACTCACCTCCGCCGCCGCCCCACTCCCCACCTCCTCCGCCACATTCACCACCACCCCCAATCTACCCTTACTTATCTCCCCCACCTCCACCAACACCTGTCTACTCCCCACCTCCACCGGTCTATTCACCGCCGCCCCCACCGCCGTGTATAGAGCCTCCCCCACCACCGCCGCCACCATGTATAGAATATCACGAACCCCCACCGCCACCGTCCCCATCACCACCGCCGCCCATCCAGTACCTCCCTCCACCATCTCCTTCACCCCCACCACCCACCCCAGTTTACCATTCCCCTCCTCCGCCAGTTTATTACTCTCCACCACCACCATCTCCATCGCCACCGCCACCGACACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTTCTATTGA 2181 54.84 MKSNTLFTIPLFLFFFAVLLCKASSDDLLPLSGHGGGAGGGLTDAEAHYIRQRQLLYYRDEFGDRGENVTVDPKLVFENDRIRNAYIALQAWKQAILSDPLNLTRNWVGSDVCSYEGVFCALAPDNSSVRTVSGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKHLKLLFELDLSNNRFAGAFPRVVLQLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIIMMNNGFRSCLPAEIGLLKNLTVLDLSFNEFFGKLPETVGGMVSLEQLNVAHNFLSGKIPENICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPERPVQRSEKQCKSFLSKPLDCSSFGCHSSFVAPSPPVVVVPSPPPVVVPTPSPSPPVHASHPIYRPRPPPPPVPSPSPPPPPPVYSPPPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPSPVYSPPPPSPPPPSPPPPSPVYCVRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPMYSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPTPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPPIQYLPPPSPSPPPPTPVYHSPPPPVYYSPPPPSPSPPPPTPVYEGPLPPIYGVSYASPPPPPFY 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30049672 30053395 + Sed0011918.1 Sed10g1400 727904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1400 726 Pfam Leucine rich repeat 158 213 IPR001611 GO:0005515(InterPro)
Sed10g1400 726 MobiDBLite consensus disorder prediction 645 678 - -
Sed10g1400 726 FunFam Leucine-rich repeat extensin-like protein 1 86 247 - -
Sed10g1400 726 PRINTS Proline rich extensin signature 453 465 - -
Sed10g1400 726 PRINTS Proline rich extensin signature 465 486 - -
Sed10g1400 726 PRINTS Proline rich extensin signature 412 424 - -
Sed10g1400 726 PRINTS Proline rich extensin signature 431 447 - -
Sed10g1400 726 FunFam Leucine-rich repeat extensin-like protein 5 248 387 - -
Sed10g1400 726 Pfam Leucine rich repeat N-terminal domain 88 120 IPR013210 -
Sed10g1400 726 Gene3D Ribonuclease Inhibitor 86 246 IPR032675 -
Sed10g1400 726 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 531 IPR051582 -
Sed10g1400 726 MobiDBLite consensus disorder prediction 424 557 - -
Sed10g1400 726 MobiDBLite consensus disorder prediction 576 599 - -
Sed10g1400 726 Gene3D Ribonuclease Inhibitor 247 388 IPR032675 -
Sed10g1400 726 Pfam Leucine Rich Repeat 321 343 IPR001611 GO:0005515(InterPro)
Sed10g1400 726 Pfam Leucine Rich Repeat 297 318 IPR001611 GO:0005515(InterPro)
Sed10g1400 726 SUPERFAMILY L domain-like 86 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1400 Sed-Chr10:30049672 Sed12g0961 Sed-Chr12:5979910 2.60E-33 dispersed
Sed01g2625 Sed-Chr1:20317195 Sed10g1400 Sed-Chr10:30049672 7.50E-44 transposed
Sed12g1856 Sed-Chr12:29807283 Sed10g1400 Sed-Chr10:30049672 2.20E-70 transposed
Sed10g1400 Sed-Chr10:30049672 Sed11g0071 Sed-Chr11:675560 1.50E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1400 - - - 0.0