Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1400 | ATGAAGAGCAATACCCTTTTCACCATTCCTCTTTTCCTTTTCTTCTTCGCCGTTCTTTTGTGCAAGGCTTCTTCCGATGACCTTCTCCCACTTTCCGGCCATGGCGGCGGCGCCGGCGGAGGACTCACCGACGCCGAAGCTCACTACATTCGCCAACGGCAGCTTCTTTACTACAGAGATGAGTTCGGCGACCGTGGTGAAAATGTCACCGTCGATCCTAAGCTTGTCTTTGAAAACGACAGGATCAGGAATGCTTACATAGCCTTACAAGCTTGGAAGCAAGCCATTCTCTCCGATCCTTTGAATCTCACTCGCAATTGGGTTGGATCTGATGTTTGTAGCTACGAAGGGGTTTTCTGTGCTCTGGCGCCGGATAATTCCTCCGTCCGTACTGTTTCTGGGATCGATCTCAACCACGGCGACATTGCCGGCTACTTGCCGGAGGAGCTTGGCCTGCTTGTTGATCTTGCATTGTTCCATATCAACTCCAATCGCTTCTGCGGTACTGTTCCTCACAAGTTTAAGCACTTGAAGTTGCTGTTTGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAGCCTTCCCTCGGGTGGTTCTCCAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGATTTAACGAGTTTGAAGGGACTGTACCGAAGGAGCTTTTTGATAAGGATTTGGACGCTATTTTCATCAACCACAACAGATTCCGGTTTGAGTTGCCGGAGAATTTTGGGAACTCGCCGGTTTCGGTGATTGTTCTTGCGAACAACAAATTTCACGGCTGTGTTCCGGGGAGCATTGGGAATATGACGAGGTTGAATGAGATTATTATGATGAATAATGGGTTTCGGTCGTGTTTGCCGGCGGAGATTGGGTTGCTGAAGAATCTGACGGTGTTGGATTTAAGTTTTAATGAGTTTTTTGGGAAGTTGCCGGAGACGGTCGGCGGGATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGATTCCGGAGAATATTTGTAAGTTGCCGAATCTGCAGAACTTTACTTATTCGTATAATTTCTTCACCGGAGAAGCGCCGTCGTGTTTGGCGTTGCCGGACTTTGATGATCGGAGGAATTGTATACCGGAGCGGCCGGTTCAGCGGTCTGAGAAGCAATGTAAGTCGTTCTTGTCGAAACCTTTGGATTGTAGTTCTTTTGGATGTCATTCTTCCTTTGTTGCGCCGTCGCCACCGGTGGTGGTGGTGCCGTCCCCGCCACCTGTCGTTGTTCCAACTCCTTCGCCGTCGCCACCTGTTCACGCTTCACACCCTATTTACCGGCCACGACCTCCGCCACCGCCGGTCCCCTCTCCCTCTCCCCCTCCTCCGCCGCCTGTTTACTCTCCTCCGCCTCCTCCACCTTCCCCACCGCCCCCACCTCCGCCTGTTTACTCTCCACCCCCACCTCCTCCATCTCCTCCGCCGCCTTCTCCGCCTCCTCCACCCCCACCAGTTTACTCCCCACCCCCACCACCACCATCTCCACCGCCACCCTCACCCCCACCATCTCCAGTTTACTCTCCACCACCGCCATCTCCCCCTCCACCATCGCCTCCACCACCGTCCCCTGTTTATTGTGTCCGACCTTCACCACCACCGCCACCACCAAACTCTCCCCCACCTCCTCCTCCATTGTTCTCCCCACCTCCACCTGTTTATTATTACAATTCACCGCCACCACCCAACTCTCCACCACCGCCACCAATGTACTCACCTCCGCCGCCGCCCCACTCCCCACCTCCTCCGCCACATTCACCACCACCCCCAATCTACCCTTACTTATCTCCCCCACCTCCACCAACACCTGTCTACTCCCCACCTCCACCGGTCTATTCACCGCCGCCCCCACCGCCGTGTATAGAGCCTCCCCCACCACCGCCGCCACCATGTATAGAATATCACGAACCCCCACCGCCACCGTCCCCATCACCACCGCCGCCCATCCAGTACCTCCCTCCACCATCTCCTTCACCCCCACCACCCACCCCAGTTTACCATTCCCCTCCTCCGCCAGTTTATTACTCTCCACCACCACCATCTCCATCGCCACCGCCACCGACACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTTCTATTGA | 2181 | 54.84 | MKSNTLFTIPLFLFFFAVLLCKASSDDLLPLSGHGGGAGGGLTDAEAHYIRQRQLLYYRDEFGDRGENVTVDPKLVFENDRIRNAYIALQAWKQAILSDPLNLTRNWVGSDVCSYEGVFCALAPDNSSVRTVSGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKHLKLLFELDLSNNRFAGAFPRVVLQLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIIMMNNGFRSCLPAEIGLLKNLTVLDLSFNEFFGKLPETVGGMVSLEQLNVAHNFLSGKIPENICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPERPVQRSEKQCKSFLSKPLDCSSFGCHSSFVAPSPPVVVVPSPPPVVVPTPSPSPPVHASHPIYRPRPPPPPVPSPSPPPPPPVYSPPPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPSPVYSPPPPSPPPPSPPPPSPVYCVRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPMYSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPTPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPPIQYLPPPSPSPPPPTPVYHSPPPPVYYSPPPPSPSPPPPTPVYEGPLPPIYGVSYASPPPPPFY | 726 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30049672 | 30053395 | + | Sed0011918.1 | Sed10g1400 | 727904 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1400 | 726 | Pfam | Leucine rich repeat | 158 | 213 | IPR001611 | GO:0005515(InterPro) | |
Sed10g1400 | 726 | MobiDBLite | consensus disorder prediction | 645 | 678 | - | - | |
Sed10g1400 | 726 | FunFam | Leucine-rich repeat extensin-like protein 1 | 86 | 247 | - | - | |
Sed10g1400 | 726 | PRINTS | Proline rich extensin signature | 453 | 465 | - | - | |
Sed10g1400 | 726 | PRINTS | Proline rich extensin signature | 465 | 486 | - | - | |
Sed10g1400 | 726 | PRINTS | Proline rich extensin signature | 412 | 424 | - | - | |
Sed10g1400 | 726 | PRINTS | Proline rich extensin signature | 431 | 447 | - | - | |
Sed10g1400 | 726 | FunFam | Leucine-rich repeat extensin-like protein 5 | 248 | 387 | - | - | |
Sed10g1400 | 726 | Pfam | Leucine rich repeat N-terminal domain | 88 | 120 | IPR013210 | - | |
Sed10g1400 | 726 | Gene3D | Ribonuclease Inhibitor | 86 | 246 | IPR032675 | - | |
Sed10g1400 | 726 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 13 | 531 | IPR051582 | - | |
Sed10g1400 | 726 | MobiDBLite | consensus disorder prediction | 424 | 557 | - | - | |
Sed10g1400 | 726 | MobiDBLite | consensus disorder prediction | 576 | 599 | - | - | |
Sed10g1400 | 726 | Gene3D | Ribonuclease Inhibitor | 247 | 388 | IPR032675 | - | |
Sed10g1400 | 726 | Pfam | Leucine Rich Repeat | 321 | 343 | IPR001611 | GO:0005515(InterPro) | |
Sed10g1400 | 726 | Pfam | Leucine Rich Repeat | 297 | 318 | IPR001611 | GO:0005515(InterPro) | |
Sed10g1400 | 726 | SUPERFAMILY | L domain-like | 86 | 366 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g1400 | Sed-Chr10:30049672 | Sed12g0961 | Sed-Chr12:5979910 | 2.60E-33 | dispersed | |
Sed01g2625 | Sed-Chr1:20317195 | Sed10g1400 | Sed-Chr10:30049672 | 7.50E-44 | transposed | |
Sed12g1856 | Sed-Chr12:29807283 | Sed10g1400 | Sed-Chr10:30049672 | 2.20E-70 | transposed | |
Sed10g1400 | Sed-Chr10:30049672 | Sed11g0071 | Sed-Chr11:675560 | 1.50E-97 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1400 | - | - | - | 0.0 |