Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1420 ATGCCATCTTCTCAAGAGCTTAGCCTTGATTGCAAGCCTCAAAGCTACTCTTTGTTGTTGAAATCTTTTGTTTCAGATCAAATGAGTGTTCCTCAAAAGCAACTTGAAGAATTGTTGTCATGTCTTGAAGGCGAAAGACTCAAAATTGATGCTTTCAAACGTGAACTTCCTCTTTGCATGCAACTTTTAACCAATGCTTTGGAGACTTCTAAACAACAACTACAAGCATGCAGAGTAAACAACAACATTCATGAAAATGGTTCATCAAAACCAATTCTTGAAGAGTTCATTCCCCTAAAACAAGCAACCTCAGAAGGCTCAGAAACCCTATCAAACATTTCTGATAAGGCAAATTGGATGACGTCAGCCCAACTTTGGAGCCAAACAACAACAAATGATGAAACAAAACCAAATCTTTCTTCTTCTAAACAACCCATTATTGATCATCACCATCACCAAATTGGTGGAGCTTTTCTTCCCTTTTCAAAAGATAGAATTTTGAGCACAACCCAAAATTCTAATTCTTCCAACCTTCCCGATTTGGCCCTCGCCGCCGGCGATCACAAAGAGAATGACGAAAACAAGTGTGTTAATTCCGATCACGACCCGCCGGAAAATGGCAATTTGGTGGCCGGAAAAGTGGGGTTGGCCGGAGATATTGGACAAATTACGAGTAATAATATTTCTTCTTCCACGGTGGCTAATAATAACAATAATAATAATAATGCTAACAATAATAATTCTAGTAATCAGACTCACCGGAAAGCTAGACGGTGCTGGTCGCCGGATTTGCACCGGCGGTTTGTCAATGCTCTTCAAATGCTTGGTGGATCACAAGTTGCCACCCCAAAGCAAATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAGGTTAAAAGCCATCTGCAGAAATATAGGTTGCACACAAGACGACCAAGTCCAAGCCCACAAGCGGCCGGAGCTCCGGCGCCGCAGCTGGTTGTATTGAGAGGCATCTGGGTCCCACCAGATTACGCCACCGCCGCCTCACACGGCGGAGCTCCGGCATTGTACGGACCACACCCAACACCCTACTGTGCACCACCAGTGCACCAAGATTTCTATCCGCCTCCGCCGCTGCCGCCGCACCACCAGCTCCACCACCAACATGCTTTCCACCAGCAGCTACAAATGTACAATACCGCCGCGGCCGTTCAGGCCCAAAGTTCGCCAGCCTCCGACCCCCGAGGAAACGGCGACCGGTCCGAGAGCATCGAGGACGGTGGGAAGTCGGAGAGCGGCAGCTGGAGGGCGGAGAGCGGCGGAGAGAACAACGGCGGCGGAGGGGACAGAAATGGGAACTTGGCGGCGCTCCGGCAAGAGGTCGGAGAGGAAAGCAATGGGAGTGAAATTATACTAAAGTTCTGA 1413 47.98 MPSSQELSLDCKPQSYSLLLKSFVSDQMSVPQKQLEELLSCLEGERLKIDAFKRELPLCMQLLTNALETSKQQLQACRVNNNIHENGSSKPILEEFIPLKQATSEGSETLSNISDKANWMTSAQLWSQTTTNDETKPNLSSSKQPIIDHHHHQIGGAFLPFSKDRILSTTQNSNSSNLPDLALAAGDHKENDENKCVNSDHDPPENGNLVAGKVGLAGDIGQITSNNISSSTVANNNNNNNNANNNNSSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGAPAPQLVVLRGIWVPPDYATAASHGGAPALYGPHPTPYCAPPVHQDFYPPPPLPPHHQLHHQHAFHQQLQMYNTAAAVQAQSSPASDPRGNGDRSESIEDGGKSESGSWRAESGGENNGGGGDRNGNLAALRQEVGEESNGSEIILKF 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30269100 30274040 + Sed0001041.1 Sed10g1420 727924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1420 470 MobiDBLite consensus disorder prediction 397 412 - -
Sed10g1420 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 252 312 IPR017930 -
Sed10g1420 470 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 29 425 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1420 470 MobiDBLite consensus disorder prediction 397 470 - -
Sed10g1420 470 FunFam Myb family transcription factor 254 312 - -
Sed10g1420 470 SUPERFAMILY Homeodomain-like 252 313 IPR009057 -
Sed10g1420 470 MobiDBLite consensus disorder prediction 228 257 - -
Sed10g1420 470 MobiDBLite consensus disorder prediction 414 428 - -
Sed10g1420 470 Gene3D - 254 312 - -
Sed10g1420 470 MobiDBLite consensus disorder prediction 228 255 - -
Sed10g1420 470 Pfam Myb-like DNA-binding domain 257 308 IPR001005 -
Sed10g1420 470 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 310 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2059 Sed-Chr7:35923777 Sed10g1420 Sed-Chr10:30269100 1.60E-40 dispersed
Sed08g0734 Sed-Chr8:5379300 Sed10g1420 Sed-Chr10:30269100 2.30E-88 dispersed
Sed10g1420 Sed-Chr10:30269100 Sed10g2051 Sed-Chr10:37036147 9.40E-37 dispersed
Sed10g1420 Sed-Chr10:30269100 Sed01g0333 Sed-Chr1:2507008 4.40E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39814 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1420 - - - 0.0