Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1420 | ATGCCATCTTCTCAAGAGCTTAGCCTTGATTGCAAGCCTCAAAGCTACTCTTTGTTGTTGAAATCTTTTGTTTCAGATCAAATGAGTGTTCCTCAAAAGCAACTTGAAGAATTGTTGTCATGTCTTGAAGGCGAAAGACTCAAAATTGATGCTTTCAAACGTGAACTTCCTCTTTGCATGCAACTTTTAACCAATGCTTTGGAGACTTCTAAACAACAACTACAAGCATGCAGAGTAAACAACAACATTCATGAAAATGGTTCATCAAAACCAATTCTTGAAGAGTTCATTCCCCTAAAACAAGCAACCTCAGAAGGCTCAGAAACCCTATCAAACATTTCTGATAAGGCAAATTGGATGACGTCAGCCCAACTTTGGAGCCAAACAACAACAAATGATGAAACAAAACCAAATCTTTCTTCTTCTAAACAACCCATTATTGATCATCACCATCACCAAATTGGTGGAGCTTTTCTTCCCTTTTCAAAAGATAGAATTTTGAGCACAACCCAAAATTCTAATTCTTCCAACCTTCCCGATTTGGCCCTCGCCGCCGGCGATCACAAAGAGAATGACGAAAACAAGTGTGTTAATTCCGATCACGACCCGCCGGAAAATGGCAATTTGGTGGCCGGAAAAGTGGGGTTGGCCGGAGATATTGGACAAATTACGAGTAATAATATTTCTTCTTCCACGGTGGCTAATAATAACAATAATAATAATAATGCTAACAATAATAATTCTAGTAATCAGACTCACCGGAAAGCTAGACGGTGCTGGTCGCCGGATTTGCACCGGCGGTTTGTCAATGCTCTTCAAATGCTTGGTGGATCACAAGTTGCCACCCCAAAGCAAATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAGGTTAAAAGCCATCTGCAGAAATATAGGTTGCACACAAGACGACCAAGTCCAAGCCCACAAGCGGCCGGAGCTCCGGCGCCGCAGCTGGTTGTATTGAGAGGCATCTGGGTCCCACCAGATTACGCCACCGCCGCCTCACACGGCGGAGCTCCGGCATTGTACGGACCACACCCAACACCCTACTGTGCACCACCAGTGCACCAAGATTTCTATCCGCCTCCGCCGCTGCCGCCGCACCACCAGCTCCACCACCAACATGCTTTCCACCAGCAGCTACAAATGTACAATACCGCCGCGGCCGTTCAGGCCCAAAGTTCGCCAGCCTCCGACCCCCGAGGAAACGGCGACCGGTCCGAGAGCATCGAGGACGGTGGGAAGTCGGAGAGCGGCAGCTGGAGGGCGGAGAGCGGCGGAGAGAACAACGGCGGCGGAGGGGACAGAAATGGGAACTTGGCGGCGCTCCGGCAAGAGGTCGGAGAGGAAAGCAATGGGAGTGAAATTATACTAAAGTTCTGA | 1413 | 47.98 | MPSSQELSLDCKPQSYSLLLKSFVSDQMSVPQKQLEELLSCLEGERLKIDAFKRELPLCMQLLTNALETSKQQLQACRVNNNIHENGSSKPILEEFIPLKQATSEGSETLSNISDKANWMTSAQLWSQTTTNDETKPNLSSSKQPIIDHHHHQIGGAFLPFSKDRILSTTQNSNSSNLPDLALAAGDHKENDENKCVNSDHDPPENGNLVAGKVGLAGDIGQITSNNISSSTVANNNNNNNNANNNNSSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGAPAPQLVVLRGIWVPPDYATAASHGGAPALYGPHPTPYCAPPVHQDFYPPPPLPPHHQLHHQHAFHQQLQMYNTAAAVQAQSSPASDPRGNGDRSESIEDGGKSESGSWRAESGGENNGGGGDRNGNLAALRQEVGEESNGSEIILKF | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30269100 | 30274040 | + | Sed0001041.1 | Sed10g1420 | 727924 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1420 | 470 | MobiDBLite | consensus disorder prediction | 397 | 412 | - | - | |
Sed10g1420 | 470 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 252 | 312 | IPR017930 | - | |
Sed10g1420 | 470 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 29 | 425 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1420 | 470 | MobiDBLite | consensus disorder prediction | 397 | 470 | - | - | |
Sed10g1420 | 470 | FunFam | Myb family transcription factor | 254 | 312 | - | - | |
Sed10g1420 | 470 | SUPERFAMILY | Homeodomain-like | 252 | 313 | IPR009057 | - | |
Sed10g1420 | 470 | MobiDBLite | consensus disorder prediction | 228 | 257 | - | - | |
Sed10g1420 | 470 | MobiDBLite | consensus disorder prediction | 414 | 428 | - | - | |
Sed10g1420 | 470 | Gene3D | - | 254 | 312 | - | - | |
Sed10g1420 | 470 | MobiDBLite | consensus disorder prediction | 228 | 255 | - | - | |
Sed10g1420 | 470 | Pfam | Myb-like DNA-binding domain | 257 | 308 | IPR001005 | - | |
Sed10g1420 | 470 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 255 | 310 | IPR006447 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g2059 | Sed-Chr7:35923777 | Sed10g1420 | Sed-Chr10:30269100 | 1.60E-40 | dispersed | |
Sed08g0734 | Sed-Chr8:5379300 | Sed10g1420 | Sed-Chr10:30269100 | 2.30E-88 | dispersed | |
Sed10g1420 | Sed-Chr10:30269100 | Sed10g2051 | Sed-Chr10:37036147 | 9.40E-37 | dispersed | |
Sed10g1420 | Sed-Chr10:30269100 | Sed01g0333 | Sed-Chr1:2507008 | 4.40E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39814 | PF00249 | Myb_DNA-binding | 1.00E-05 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1420 | - | - | - | 0.0 |