Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g1426 | ATGGGGTTCTTGGAGTGGTTTAAAGTTTGGATTTTGTGCTGTTTTTTGGTGGTGGCGGCGTTGAGGGCGGCGGTGGTGCTTTGGTGGCGGCCGAGGAAGATCGAACACCACTTTTCCCGGCAGGGAATCCGAGGGCCGCCGTATCGCTTCCTCATCGGAAATGTTAAGGAACTTGTCGGAATGATGATTAAAGCTTCCTCTTCTGATCATTCTTTTCCTAATTTCTCTCATAATATTCTTCCTCGTGTTCTTCCTTTCTATCATCATTGGAACAAGATTTATGGTTCAAAATTTCTGGTGTGGTTCGGGCCAACGGTTCGGGTGGCGGTGTCTGATCCGGACCTTATACGAGAAATCTTCACATCAAAATCAGAATTTTGTGAAAAGAACGAACCTCACCCACTGGTTAAGCAGCTTGAAGGCGATGGTCTCCTCAGCCTCAAAGGCCAGAAATGGGCTCTTCATCGCAAGATCATCTCTCCTTCTTTCCACATGGATAATCTCAAATTGTTGATTCCAGTGATGGCAAAAAGTGTTGTGGATATGCTGGAGAAATGGTCGGCAATGTCAGAAGATTCCAATGAGGTTGAAATTGAAGTTTCCGAATGGTTCCAAACCCTAACCGAAGATGTCATAACTAGGACAGCCTTTGGCTCAAGCTATGAAGATGGCAAAGCCATTTTTCGGTTACAAGCCCAACAAATGGTCCTCGCTTCTCAAGCCTTCGATAAAATTTGCATCCCCGGCTACCGATTTCTGCCGACGAGGACGAACGTGAATTCGTGGCGATTGGATAAGAAAATAAGGAAATCATTGATGAAGCTGATCAACCGACGACGGGAGAATTCGGTCGAGAGCTCGAAGGATTTGTTAGGGTTGATGATAAGGGCATCAAACTCTTCCCCATCAAGTATCACTGTTAATGACATTGTGGAAGAGTGCAAGGGGTTTTTCTTTGCTGGCAAACAGACCACATCCAATTTGCTGACGTGGACAATGATCCTCATGGCAATGCACCCACAATGGCAGGTTCAGGCACGTGATGAGGTACTAAGGGAGTGTGGAGCACGTGACATACCCTCCAAAGATGATGTTACAAAACTCAAAATGTTGAGTATGATTGTCAATGAATCATTACGGTTATATCCACCAATAGTAGCAACTATTCGACAAGCAAAAGCTGATGTGGAACTTGACGGTTACATGATTCCACGTGGCACTGAGCTTTTGATTCCAATTTTAGCAGTTCATCATGATCAAAAGATATGGGGAAATGATGTGAATGAATTTAATCCAAGACGGTTCGCAGAAGGTGTGGCAAAGGCAGCCAATCATCGAGTTGGGTTCATTCCATTTGGGCTCGGAGTTCGAACTTGTATCGGGCAAAACTTGGCTATATTGCAAACAAAGTTGGCTCTTGCAATCATACTTCAAAAGTTTTCTTTTCGATTGGGACCCTCTTACCAACATGCACCGGCGGTTCAAATGCTACTTTATCCACGATACGGTGCACCTATTATCTTTAAAAAATTATCCACGCCATTAATCGATCAAAATCAACCCTCATGA | 1569 | 44.36 | MGFLEWFKVWILCCFLVVAALRAAVVLWWRPRKIEHHFSRQGIRGPPYRFLIGNVKELVGMMIKASSSDHSFPNFSHNILPRVLPFYHHWNKIYGSKFLVWFGPTVRVAVSDPDLIREIFTSKSEFCEKNEPHPLVKQLEGDGLLSLKGQKWALHRKIISPSFHMDNLKLLIPVMAKSVVDMLEKWSAMSEDSNEVEIEVSEWFQTLTEDVITRTAFGSSYEDGKAIFRLQAQQMVLASQAFDKICIPGYRFLPTRTNVNSWRLDKKIRKSLMKLINRRRENSVESSKDLLGLMIRASNSSPSSITVNDIVEECKGFFFAGKQTTSNLLTWTMILMAMHPQWQVQARDEVLRECGARDIPSKDDVTKLKMLSMIVNESLRLYPPIVATIRQAKADVELDGYMIPRGTELLIPILAVHHDQKIWGNDVNEFNPRRFAEGVAKAANHRVGFIPFGLGVRTCIGQNLAILQTKLALAIILQKFSFRLGPSYQHAPAVQMLLYPRYGAPIIFKKLSTPLIDQNQPS | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 30418838 | 30422714 | + | Sed0011522.1 | Sed10g1426 | 727930 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g1426 | 522 | Gene3D | Cytochrome P450 | 27 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 13 | 503 | IPR050665 | GO:0004497(PANTHER)|GO:0010268(PANTHER)|GO:0016131(PANTHER) | |
| Sed10g1426 | 522 | SUPERFAMILY | Cytochrome P450 | 38 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 452 | 461 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed10g1426 | 522 | PRINTS | E-class P450 group I signature | 309 | 326 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | PRINTS | E-class P450 group I signature | 207 | 225 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | PRINTS | E-class P450 group I signature | 91 | 110 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | PRINTS | E-class P450 group I signature | 449 | 459 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | PRINTS | E-class P450 group I signature | 459 | 482 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | PRINTS | E-class P450 group I signature | 329 | 355 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | FunFam | Cytochrome P450 734A1 | 28 | 512 | - | - | |
| Sed10g1426 | 522 | PRINTS | P450 superfamily signature | 450 | 459 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | PRINTS | P450 superfamily signature | 320 | 337 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | PRINTS | P450 superfamily signature | 459 | 470 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | PRINTS | P450 superfamily signature | 373 | 384 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | Pfam | Cytochrome P450 | 87 | 487 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g1426 | 522 | CDD | CYP734 | 84 | 505 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2599 | Sed-Chr1:19869139 | Sed10g1426 | Sed-Chr10:30418838 | 1.90E-61 | dispersed | |
| Sed08g0706 | Sed-Chr8:5173316 | Sed10g1426 | Sed-Chr10:30418838 | 3.70E-151 | dispersed | |
| Sed10g1426 | Sed-Chr10:30418838 | Sed12g1720 | Sed-Chr12:28384951 | 1.80E-113 | dispersed | |
| Sed10g1426 | Sed-Chr10:30418838 | Sed11g0090 | Sed-Chr11:875648 | 2.10E-263 | wgd | |
| Sed10g1426 | Sed-Chr10:30418838 | Sed12g2390 | Sed-Chr12:33773706 | 2.40E-206 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g1426 | K15639 | - | csv:101208789 | 930.628 |