Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1443 ATGGTACCATCAAAGAAGTTCAGAGGAGTCAGGCAACGACACTGGGGATCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGAGAAGAGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAAGCAGCAAGAGCCTACGACCAGGCCGCCGTGTTGATGAGCGGTCGGAACGCCAAAACCAACTTTCCGATCAGCCAAACGGCGGCGCCGGAATCTCAAAAACCCGAAAACAACAAGAACCCTAATTCCCCATCTTCATCTTCTTCAAAGGGCTTATCAGAGATCCTCCACGCCAAGCTCCGAAAATGCAGCAAAGCCCCCTCGCCCTCGATGACGTGTCTCCGTCTCGACACCGAAAACTCCCACATCGGCGTTTGGCAGAAACGCGCCGGCCCTCGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGTAAAAACAACAACAACAACAACAACAACAACAATGACGACGGTGCGGGGTTGGGGTGTAACAACGACAACGACTACAACAACGGTTTGAGCTCGAAAGGCGAAGCTCCAATAATGGCGGCGGGTGGGCTTCACATGAGAAACTTGGAAAAGGATGATGAAGAAAGAATTGCGTTACAAATGATTGAGGAGTTGCTGAGCAGAAATTACAGCAACCCATCTGATCATATTCTTCAAGGGGAAGCAAGTTTTAATTACCCTCACTAA 699 50.79 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPISQTAAPESQKPENNKNPNSPSSSSSKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGPRSDSSWVMTVHLGKNNNNNNNNNNDDGAGLGCNNDNDYNNGLSSKGEAPIMAAGGLHMRNLEKDDEERIALQMIEELLSRNYSNPSDHILQGEASFNYPH 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30652516 30655357 - Sed0002533.1 Sed10g1443 727947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1443 232 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1443 232 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 141 IPR050913 -
Sed10g1443 232 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1443 232 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1443 232 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Sed10g1443 232 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1443 232 MobiDBLite consensus disorder prediction 66 92 - -
Sed10g1443 232 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Sed10g1443 232 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1443 232 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1443 232 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1699 Sed-Chr5:30831780 Sed10g1443 Sed-Chr10:30652516 8.50E-53 dispersed
Sed06g1160 Sed-Chr6:33132144 Sed10g1443 Sed-Chr10:30652516 2.80E-25 dispersed
Sed06g2113 Sed-Chr6:45041480 Sed10g1443 Sed-Chr10:30652516 1.30E-23 dispersed
Sed10g1443 Sed-Chr10:30652516 Sed13g2026 Sed-Chr13:25166544 7.60E-56 dispersed
Sed10g1443 Sed-Chr10:30652516 Sed12g2379 Sed-Chr12:33682091 8.70E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39816 PF00847 AP2 3.30E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1443 - - - 0.0