Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1447 ATGTCAAGCTGCACCAACACTTCACAAGAACAAATCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAACCATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAATATGGCTGCTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGCTTCAAGCAACAGTGGTAGCAGTGCAGCTGATTATAGGGTTGAATTGGGCTCATCATCAAAATCCAACAACAAAATGAAAATGAGGGCTCCAATTAAAAACCCTACAAATAATGATCCAAGGGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATTAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGACTCATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTTATGTCAGTGCCAGGGCTGCACTATTGA 570 42.28 MSSCTNTSQEQICYIPCNFCNIVLAVSVPCNHLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASSNSGSSAADYRVELGSSSKSNNKMKMRAPIKNPTNNDPRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30726743 30731602 - Sed0024139.1 Sed10g1447 727951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1447 189 PANTHER PROTEIN YABBY 6-RELATED 8 174 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Sed10g1447 189 Pfam YABBY protein 8 163 IPR006780 GO:0007275(InterPro)
Sed10g1447 189 Gene3D High mobility group box domain 104 170 IPR036910 -
Sed10g1447 189 MobiDBLite consensus disorder prediction 83 118 - -
Sed10g1447 189 CDD HMG-box_SF 117 153 - -
Sed10g1447 189 MobiDBLite consensus disorder prediction 83 106 - -
Sed10g1447 189 FunFam axial regulator YABBY 5-like 101 159 - -
Sed10g1447 189 SUPERFAMILY HMG-box 100 156 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1256 Sed-Chr3:8067850 Sed10g1447 Sed-Chr10:30726743 1.00E-38 dispersed
Sed05g0986 Sed-Chr5:8360224 Sed10g1447 Sed-Chr10:30726743 1.80E-41 dispersed
Sed10g1447 Sed-Chr10:30726743 Sed11g0124 Sed-Chr11:1057656 1.20E-86 dispersed
Sed10g1447 Sed-Chr10:30726743 Sed11g0122 Sed-Chr11:1057656 1.80E-95 wgd
Sed10g1447 Sed-Chr10:30726743 Sed12g2369 Sed-Chr12:33608023 4.40E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39817 PF04690 YABBY 1.50E-70 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1447 K25796 - csv:101219877 322.013