Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1447 | ATGTCAAGCTGCACCAACACTTCACAAGAACAAATCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAACCATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAATATGGCTGCTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGCTTCAAGCAACAGTGGTAGCAGTGCAGCTGATTATAGGGTTGAATTGGGCTCATCATCAAAATCCAACAACAAAATGAAAATGAGGGCTCCAATTAAAAACCCTACAAATAATGATCCAAGGGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATTAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGACTCATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTTATGTCAGTGCCAGGGCTGCACTATTGA | 570 | 42.28 | MSSCTNTSQEQICYIPCNFCNIVLAVSVPCNHLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASSNSGSSAADYRVELGSSSKSNNKMKMRAPIKNPTNNDPRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30726743 | 30731602 | - | Sed0024139.1 | Sed10g1447 | 727951 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1447 | 189 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 174 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Sed10g1447 | 189 | Pfam | YABBY protein | 8 | 163 | IPR006780 | GO:0007275(InterPro) | |
Sed10g1447 | 189 | Gene3D | High mobility group box domain | 104 | 170 | IPR036910 | - | |
Sed10g1447 | 189 | MobiDBLite | consensus disorder prediction | 83 | 118 | - | - | |
Sed10g1447 | 189 | CDD | HMG-box_SF | 117 | 153 | - | - | |
Sed10g1447 | 189 | MobiDBLite | consensus disorder prediction | 83 | 106 | - | - | |
Sed10g1447 | 189 | FunFam | axial regulator YABBY 5-like | 101 | 159 | - | - | |
Sed10g1447 | 189 | SUPERFAMILY | HMG-box | 100 | 156 | IPR036910 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1256 | Sed-Chr3:8067850 | Sed10g1447 | Sed-Chr10:30726743 | 1.00E-38 | dispersed | |
Sed05g0986 | Sed-Chr5:8360224 | Sed10g1447 | Sed-Chr10:30726743 | 1.80E-41 | dispersed | |
Sed10g1447 | Sed-Chr10:30726743 | Sed11g0124 | Sed-Chr11:1057656 | 1.20E-86 | dispersed | |
Sed10g1447 | Sed-Chr10:30726743 | Sed11g0122 | Sed-Chr11:1057656 | 1.80E-95 | wgd | |
Sed10g1447 | Sed-Chr10:30726743 | Sed12g2369 | Sed-Chr12:33608023 | 4.40E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39817 | PF04690 | YABBY | 1.50E-70 | CL0114 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1447 | K25796 | - | csv:101219877 | 322.013 |