Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1460 ATGGACGAAAATCAAAAGTGTGGCTGTTGGGCTGTTCTTAAACGCACCGTTTCGGATGCCTCCAAATCCTCTAAACATTCCCCTAATTCCATTCCTCGTGTTACTTTGCTTTGCGATTCAGCTACCGAGACGCGATACCTAAACGCCAGCAACCGAGATCTTTGCCTTCCTGCCGAAGATCGGCCATCCTTCGACACCTCTCCACCGCCGCCGCCGCCGCTTGAGGTCAAATCCAAACGCCAGTTACTGAAATTTTCATTTCAGGAACTGAGATCGGCGACCGGAAACTTCCGACCGGATAGCATACTCGGAGAAGGAGGGTTTGGATTCGTGTTCAAAGGATGGATCGAAGAGAACGGCACCGCGCCGGCCAAGCCTGGATCAGGGATCTCAGTCGCCGTCAAAAGCTTAAAGCCAGATGGCCTTCAAGGCCACCGTGAATGGGAGGCTGAGGTTAGTTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAACTTATTGGATACTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAACCATCTATTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCCCTTGCTGCAGCCAAAGGCTTGGCCTTCCTTCACAATGGTCCGGAACCTGTCATATATAGAGATTTCAAGACATCAAATATATTGCTTGATACAGAGTACAATGCGAAGCTTTCGGATTTTGGTTTGGCGAAGGCTGGGCCTCAGGGAGACAAAACACACGTTTCCACCAGAGTAGTTGGCACCTATGGTTATGCTGCCCCAGAATATCTAATGACGGGGCATTTGACGTCAAAGAGTGATGTTTATAGCTTCGGTGTTGTCCTACTCGAGATCTTAACTGGGAGAAGATCAATGGACAAGAAACGTCCAAGTGGTGAGCAGAATCTGGTGTCATGGGCTAGGCCATATTTAGAGGACAAAAGGAAGCTTTACCATATAGTGGATCCTCGCTTGGAGCTTAACTACTCCATTCAGGGGGTTCAGAAAGTCTCTAAACTAGCTTCTCACTGCATCAGTAGAGATCCAAAATCCCGTCCCGCCATGGATGAAGTTGTCAATGCTCTCGCTCCACTACAAGACCTTAACGACCTTGCCGTAGCCTATCATTCGCGTTTGTCTCAGCAAGCTCGACGAAAGAAGAAATCAGATGGTCTGCACCAGTTAACATACACTCAGTCAAGAAATTTCAGAACTTCTCCTATGAATGTCGGAATCGTTAATCATCGTCGATGA 1296 46.99 MDENQKCGCWAVLKRTVSDASKSSKHSPNSIPRVTLLCDSATETRYLNASNRDLCLPAEDRPSFDTSPPPPPPLEVKSKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGISVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLEDKRKLYHIVDPRLELNYSIQGVQKVSKLASHCISRDPKSRPAMDEVVNALAPLQDLNDLAVAYHSRLSQQARRKKKSDGLHQLTYTQSRNFRTSPMNVGIVNHRR 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30952107 30959390 - Sed0013302.1 Sed10g1460 727964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1460 431 FunFam Probable serine/threonine-protein kinase PBL8 183 397 - -
Sed10g1460 431 ProSitePatterns Protein kinases ATP-binding region signature. 103 135 IPR017441 GO:0005524(InterPro)
Sed10g1460 431 PANTHER OS01G0588500 PROTEIN-RELATED 77 380 IPR050823 -
Sed10g1460 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1460 431 SUPERFAMILY Protein kinase-like (PK-like) 82 380 IPR011009 -
Sed10g1460 431 CDD STKc_IRAK 103 379 - -
Sed10g1460 431 Pfam Protein tyrosine and serine/threonine kinase 101 376 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1460 431 Gene3D Transferase(Phosphotransferase) domain 1 183 401 - -
Sed10g1460 431 Gene3D Phosphorylase Kinase; domain 1 74 182 - -
Sed10g1460 431 FunFam Serine/threonine-protein kinase BIK1 72 182 - -
Sed10g1460 431 ProSiteProfiles Protein kinase domain profile. 97 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0668 Sed-Chr8:4715085 Sed10g1460 Sed-Chr10:30952107 9.70E-182 dispersed
Sed10g1460 Sed-Chr10:30952107 Sed11g1986 Sed-Chr11:34056097 1.80E-143 dispersed
Sed10g1460 Sed-Chr10:30952107 Sed12g2358 Sed-Chr12:33540933 3.10E-188 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79858 PF07714 PK_Tyr_Ser-Thr 1.70E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1460 - - - 0.0