Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1466 ATGGAAGCCGCCGACACCTCCAATGGCGACGAAGAATCCATTATCGCTCCTTTGCTCGCTCCTCACAAATCCCTCATCAATTCTTCCTCGCAGGTTGCCCTTGTTGGCGCTAATGTCTGCCCTATCGAGAGCCTCGATTACGAGATTTTTGATAATGAGTTCTTCGTGCAAGATTGGAGGAGCCGTGAGGATTTCCAGATATTTCAATATCTGGTTATGAAGTGGCTTTCATGCTTCTTGATTGGTTTGATTATGGGTCTTGTTGGGTTTTTCAATAATCTGGCTGTGGAGAATATTGCGGGCAAGAAGTTTGTGGTTACTTCCAATATGATGCTTCAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTTGTTCTCACCCTATTCGCATCTGTTATTACCGCATTGATCTGCCCCCAAGCGGCTGGCTCAGGTATACCGGAAGTAAAGGCTTATCTGAATGGCGTGGATGCCCCCGGAATACTTTCACCCCGGGCATTGTTAGTGAAGGTGGAGAAGTGCCCTTTTGTGGCGATCATTTTTCACGACGGCTGTCGTGGCTGTGATTTTCCCTCATATCACCTCAAAGATCTACTTCCTGTGATTGCCCTTGCTTTTATCGGAGGCATACTTGGAAGCTTATATAATTTTCTTTTAAATAAAGTTCTTCGCATTTATAACCTCATACACGAGAAAGGCATTGCTTACAAAATTTTACTGGCTTGCTTCATCTCAATTTTCACATCCTGTCTTCTTTTTGGATTACCATGGTTTGCACCGTGCCAACCTTGCCCGTCAAGTGCTCAAGAAATTTGTCCTACGATAGGCCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTAGTCACTACAATGATCTTGCAAGTCTCATATTTAATACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGCCACAGAATCTGAGTTCCAATTCTCATCAATGCTCATATTTTTCATTGCCTGTTTTTCCTTGAGCATTATCAGTTACGGGACGGTTGCTCCTGTTGGCCTTTTTGTCCCTGTCATTGTTACGGGAGCTTCTTATGGTCGTTTTGTTGGAATGGTTGTCAGTCCATACACGAACCTCAGCCACGGCTTCTTTGCCGTGTTGGGTGCTGCATCATTTCTTGGGGGGACGATGAGAACAACTGTTTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGTTGCCTTTGGTAATGTTGGTTCTCCTTATTTCCAAGACTGTAGCTGATGGATTCAACTGTAATATATATAACCAGATCATGAAAGCAAAAGGATTCCCTTATCTTGAAGGTCATGTTGAGCCATACATGAGGCAGCTGACTGTCGCTGATGTGTTGACAAGTCCGCTTCAATTATTTCGTGGCATTGAGAAGGTTCGTGATGTAGTAAGTGTTCTCAAATGGACGAGCCATCATGGATTTCCTGTCGTTGACGAGCCTCCTTTCTCTGAATTCCCTGTTTTATATGGCCTAATACTCAGAGCCCATCTTATCATCTTGTTAAAGAAGAAAGCTTTCTTGTCGTCTGTTCCAACACTAGGAAAGGATGCCTTGAAGCTATTCTCAGCTGATGATTTTTCAAAGATGGGTTCGGGCGACATTGATAGGATTGAAGATGTACAATTGACCAATGAAGAGATGGACATGTTCATTGATCTACGTCCGTTCGCTAATACTTCACCTTGCACCGTCTTGGAGACGATGACATTGGCCAAGGCTCTCGAAATTTTTCGAGAAACTGGTTTACGACACATGCTAGTGATACCCAAGGTCCCTAGGAGATTGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTTTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGGTTAAGAATCAAATTTCACCTGAAGAATAAATTCTTCTAG 1968 43.14 MEAADTSNGDEESIIAPLLAPHKSLINSSSQVALVGANVCPIESLDYEIFDNEFFVQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLQGRYGMAFLVFSVSNFVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRALLVKVEKCPFVAIIFHDGCRGCDFPSYHLKDLLPVIALAFIGGILGSLYNFLLNKVLRIYNLIHEKGIAYKILLACFISIFTSCLLFGLPWFAPCQPCPSSAQEICPTIGRSGNFKKFQCAPSHYNDLASLIFNTNDDAIKNLFSKATESEFQFSSMLIFFIACFSLSIISYGTVAPVGLFVPVIVTGASYGRFVGMVVSPYTNLSHGFFAVLGAASFLGGTMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADGFNCNIYNQIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLFRGIEKVRDVVSVLKWTSHHGFPVVDEPPFSEFPVLYGLILRAHLIILLKKKAFLSSVPTLGKDALKLFSADDFSKMGSGDIDRIEDVQLTNEEMDMFIDLRPFANTSPCTVLETMTLAKALEIFRETGLRHMLVIPKVPRRLPVVGVLTRHDFMPDYILSLHPLLEKSRWKRLRIKFHLKNKFF 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31054188 31062394 - Sed0018919.2 Sed10g1466 727970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1466 655 SUPERFAMILY CBS-domain pair 450 625 IPR046342 -
Sed10g1466 655 Gene3D Clc chloride channel 185 447 - -
Sed10g1466 655 CDD CBS_pair_voltage-gated_CLC_euk_bac 459 627 - -
Sed10g1466 655 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 194 626 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Sed10g1466 655 Pfam Voltage gated chloride channel 194 428 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g1466 655 Pfam CBS domain 577 625 IPR000644 -
Sed10g1466 655 SUPERFAMILY Clc chloride channel 52 449 IPR014743 -
Sed10g1466 655 ProSiteProfiles CBS domain profile. 575 635 IPR000644 -
Sed10g1466 655 Gene3D Clc chloride channel 66 184 - -
Sed10g1466 655 SMART cbs_1 467 520 IPR000644 -
Sed10g1466 655 SMART cbs_1 578 631 IPR000644 -
Sed10g1466 655 Gene3D - 448 627 IPR046342 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1466 Sed-Chr10:31054188 Sed10g1468 Sed-Chr10:31054188 0.00E+00 dispersed
Sed10g1465 Sed-Chr10:31054188 Sed10g1466 Sed-Chr10:31054188 0.00E+00 tandem
Sed10g1466 Sed-Chr10:31054188 Sed10g1467 Sed-Chr10:31054188 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1466 K05016 - csv:101216071 793.112