Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g1467 | ATGAGCAGAAGAAAACGAGTCGCCAAAATTAAAGACGAACGAAACAGAGAGAGAAAGGAACGTTGTCAATGGAAGCCGCCGACACCTCCAATGGCGACGAAGAATCCATTATCGCTCCTTTGCTCGCTCCTCACAAATCCCTCATCAATTCTTCCTCGCAGGTTGCCCTTGTTGGCGCTAATGTCTGCCCTATCGAGAGCCTCGATTACGAATTGGAGGAGCCGTGAGGATTTCCAGATATTTCAATATCTGGTTATGAAGTGGCTTTCATGCTTCTTGATTGGTTTGATTATGGGTCTTGTTGGGTTTTTCAATAATCTGGCTGTGGAGAATATTGCGGGCAAGAAGTTTGTGGTTACTTCCAATATGATGCTTCAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTTGTTCTCACCCTATTCGCATCTGTTATTACCGCATTGATCTGCCCCCAAGCGGCTGGCTCAGGTATACCGGAAGTAAAGGCTTATCTGAATGGCGTGGATGCCCCCGGAATACTTTCACCCCGGGCATTGTTAGTGAAGATTATTGGCAGCATTTCTATTGTGTCGTCATCTATGATCGTTGGAAAAGCTGGACCTATGGTACATACAGGGGCATGTGTTGCATCCCTGGTAGGTCAGGGGGGTTTCAAAATGTTTGGTTTAACATGGAAATGGCTATTCTGTCTCAAGAATAATCGAGATAGGCGGGATCTTGTAACATGTGGAGCTGCTGCTGGAATTGCTGCTGCTTTTCGTGCTCCGGTTGGTGGTGTGCTGTTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTTTGTGGCGATCATTTTTCACGACGGCTGTCGTGGCTGTGGTATTACGCTCACTGATTGACGTTTGTTTAAATGGATCATGTGGATTATTTGGTAAAGGGGGACTTATTATATTTGACACCTACTCAGATTTTCCCTCATATCACCTCAAAGATCTACTTCCTGTGATTGCCCTTGCTTTTATCGGAGGCATACTTGGAAGCTTATATAATTTTCTTTTAAATAAAGTTCTTCGCATTTATAACCTCATACACGAGAAAGGCATTGCTTACAAAATTTTACTGGCTTGCTTCATCTCAATTTTCACATCCTGTCTTCTTTTTGGATTACCATGGTTTGCACCGTGCCAACCTTGCCCGTCAAGTGCTCAAGAAATTTGTCCTACGATAGGCCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTAGTCACTACAATGATCTTGCAAGTCTCATATTTAATACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGCCACAGAATCTGAGTTCCAATTCTCATCAATGCTCATATTTTTCATTGCCTGTTTTTCCTTGAGCATTATCAGTTACGGGACGGTTGCTCCTGTTGGCCTTTTTGTCCCTGTCATTGTTACGGGAGCTTCTTATGGTCGTTTTGTTGGAATGGTTGTCAGTCCATACACGAACCTCAGCCACGGCTTCTTTGCCGTGTTGGGTGCTGCATCATTTCTTGGGGGGACGATGAGAACAACTGTTTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGTTGCCTTTGGTAATGTTGGTTCTCCTTATTTCCAAGACTGTAGCTGATGGATTCAACTGTAATATATATAACCAGATCATGAAAGCAAAAGGATTCCCTTATCTTGAAGGTCATGTTGAGCCATACATGAGGCAGCTGACTGTCGCTGATGTGTTGACAAGTCCGCTTCAATTATTTCGTGGCATTGAGAAGGTTCGTGATGTAGTAAGTGTTCTCAAATGGACGAGCCATCATGGATTTCCTGTCGTTGACGAGCCTCCTTTCTCTGAATTCCCTGTTTTATATGGCCTAATACTCAGAGCCCATCTTATCATCTTGTTAAAGAAGAAAGCTTTCTTGTCGTCTGTTCCAACACTAGGAAAGGATGCCTTGAAGCTATTCTCAGCTGATGATTTTTCAAAGATGGGTTCGGGCGACATTGATAGGATTGAAGATGTACAATTGACCAATGAAGAGATGGACATGTTCATTGATCTACGTCCGTTCGCTAATACTTCACCTTGCACCGTCTTGGAGACGATGACATTGGCCAAGGCTCTCGAAATTTTTCGAGAAACTGGTTTACGACACATGCTAGTGATACCCAAGGTCCCTAGGAGATTGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTTTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGGTTAAGAATCAAATTTCACCTGAAGAATAAATTCTTCTAG | 2358 | 43.21 | MSRRKRVAKIKDERNRERKERCQWKPPTPPMATKNPLSLLCSLLTNPSSILPRRLPLLALMSALSRASITNWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLQGRYGMAFLVFSVSNFVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRALLVKIIGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFKMFGLTWKWLFCLKNNRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRSFFTTAVVAVVLRSLIDVCLNGSCGLFGKGGLIIFDTYSDFPSYHLKDLLPVIALAFIGGILGSLYNFLLNKVLRIYNLIHEKGIAYKILLACFISIFTSCLLFGLPWFAPCQPCPSSAQEICPTIGRSGNFKKFQCAPSHYNDLASLIFNTNDDAIKNLFSKATESEFQFSSMLIFFIACFSLSIISYGTVAPVGLFVPVIVTGASYGRFVGMVVSPYTNLSHGFFAVLGAASFLGGTMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADGFNCNIYNQIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLFRGIEKVRDVVSVLKWTSHHGFPVVDEPPFSEFPVLYGLILRAHLIILLKKKAFLSSVPTLGKDALKLFSADDFSKMGSGDIDRIEDVQLTNEEMDMFIDLRPFANTSPCTVLETMTLAKALEIFRETGLRHMLVIPKVPRRLPVVGVLTRHDFMPDYILSLHPLLEKSRWKRLRIKFHLKNKFF | 785 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 31054188 | 31062394 | - | Sed0018919.3 | Sed10g1467 | 727971 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g1467 | 785 | Pfam | CBS domain | 707 | 755 | IPR000644 | - | |
| Sed10g1467 | 785 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Sed10g1467 | 785 | SMART | cbs_1 | 708 | 761 | IPR000644 | - | |
| Sed10g1467 | 785 | SMART | cbs_1 | 597 | 650 | IPR000644 | - | |
| Sed10g1467 | 785 | Gene3D | - | 578 | 757 | IPR046342 | - | |
| Sed10g1467 | 785 | ProSiteProfiles | CBS domain profile. | 705 | 765 | IPR000644 | - | |
| Sed10g1467 | 785 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 589 | 757 | - | - | |
| Sed10g1467 | 785 | SUPERFAMILY | Clc chloride channel | 70 | 579 | IPR014743 | - | |
| Sed10g1467 | 785 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 71 | 756 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Sed10g1467 | 785 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Sed10g1467 | 785 | Pfam | Voltage gated chloride channel | 144 | 558 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Chloride channel signature | 251 | 270 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Chloride channel signature | 526 | 545 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Chloride channel signature | 476 | 496 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Chloride channel signature | 564 | 578 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Chloride channel signature | 187 | 206 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Chloride channel signature | 156 | 173 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Chloride channel signature | 508 | 524 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed10g1467 | 785 | Gene3D | Clc chloride channel | 79 | 577 | - | - | |
| Sed10g1467 | 785 | PRINTS | Plant CLC chloride channel signature | 304 | 311 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Plant CLC chloride channel signature | 428 | 444 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Plant CLC chloride channel signature | 272 | 280 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed10g1467 | 785 | PRINTS | Plant CLC chloride channel signature | 286 | 296 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed10g1467 | 785 | FunFam | Chloride channel ClC3 | 79 | 396 | - | - | |
| Sed10g1467 | 785 | SUPERFAMILY | CBS-domain pair | 580 | 755 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g1465 | Sed-Chr10:31054188 | Sed10g1467 | Sed-Chr10:31054188 | 0.00E+00 | dispersed | |
| Sed10g1467 | Sed-Chr10:31054188 | Sed13g1106 | Sed-Chr13:10076534 | 9.00E-250 | dispersed | |
| Sed10g1466 | Sed-Chr10:31054188 | Sed10g1467 | Sed-Chr10:31054188 | 0.00E+00 | tandem | |
| Sed10g1467 | Sed-Chr10:31054188 | Sed10g1468 | Sed-Chr10:31054188 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g1467 | K05016 | - | csv:101216071 | 1250.73 |