Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1468 ATGAGCAGAAGAAAACGAGTCGCCAAAATTAAAGACGAACGAAACAGAGAGAGAAAGGAACGTTGTCAATGGAAGCCGCCGACACCTCCAATGGCGACGAAGAATCCATTATCGCTCCTTTGCTCGCTCCTCACAAATCCCTCATCAATTCTTCCTCGCAGGTTGCCCTTGTTGGCGCTAATGTCTGCCCTATCGAGAGCCTCGATTACGAATTGGAGGAGCCGTGAGGATTTCCAGATATTTCAATATCTGGTTATGAAGTGGCTTTCATGCTTCTTGATTGGTTTGATTATGGGTCTTGTTGGGTTTTTCAATAATCTGGCTGTGGAGAATATTGCGGGCAAGAAGTTTGTGGTTACTTCCAATATGATGCTTCAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTTGTTCTCACCCTATTCGCATCTGTTATTACCGCATTGATCTGCCCCCAAGCGGCTGGCTCAGGTATACCGGAAGTAAAGGCTTATCTGAATGGCGTGGATGCCCCCGGAATACTTTCACCCCGGGCATTGTTAGTGAAGGTGGAGAAGTGCCCTTTTGTGGCGATCATTTTTCACGACGGCTGTCGTGGCTGTGATTTTCCCTCATATCACCTCAAAGATCTACTTCCTGTGATTGCCCTTGCTTTTATCGGAGGCATACTTGGAAGCTTATATAATTTTCTTTTAAATAAAGTTCTTCGCATTTATAACCTCATACACGAGAAAGGCATTGCTTACAAAATTTTACTGGCTTGCTTCATCTCAATTTTCACATCCTGTCTTCTTTTTGGATTACCATGGTTTGCACCGTGCCAACCTTGCCCGTCAAGTGCTCAAGAAATTTGTCCTACGATAGGCCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTAGTCACTACAATGATCTTGCAAGTCTCATATTTAATACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGCCACAGAATCTGAGTTCCAATTCTCATCAATGCTCATATTTTTCATTGCCTGTTTTTCCTTGAGCATTATCAGTTACGGGACGGTTGCTCCTGTTGGCCTTTTTGTCCCTGTCATTGTTACGGGAGCTTCTTATGGTCGTTTTGTTGGAATGGTTGTCAGTCCATACACGAACCTCAGCCACGGCTTCTTTGCCGTGTTGGGTGCTGCATCATTTCTTGGGGGGACGATGAGAACAACTGTTTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGTTGCCTTTGGTAATGTTGGTTCTCCTTATTTCCAAGACTGTAGCTGATGGATTCAACTGTAATATATATAACCAGATCATGAAAGCAAAAGGATTCCCTTATCTTGAAGGTCATGTTGAGCCATACATGAGGCAGCTGACTGTCGCTGATGTGTTGACAAGTCCGCTTCAATTATTTCGTGGCATTGAGAAGGTTCGTGATGTAGTAAGTGTTCTCAAATGGACGAGCCATCATGGATTTCCTGTCGTTGACGAGCCTCCTTTCTCTGAATTCCCTGTTTTATATGGCCTAATACTCAGAGCCCATCTTATCATCTTGTTAAAGAAGAAAGCTTTCTTGTCGTCTGTTCCAACACTAGGAAAGGATGCCTTGAAGCTATTCTCAGCTGATGATTTTTCAAAGATGGGTTCGGGCGACATTGATAGGATTGAAGATGTACAATTGACCAATGAAGAGATGGACATGTTCATTGATCTACGTCCGTTCGCTAATACTTCACCTTGCACCGTCTTGGAGACGATGACATTGGCCAAGGCTCTCGAAATTTTTCGAGAAACTGGTTTACGACACATGCTAGTGATACCCAAGGTCCCTAGGAGATTGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTTTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGGTTAAGAATCAAATTTCACCTGAAGAATAAATTCTTCTAG 2007 43.2 MSRRKRVAKIKDERNRERKERCQWKPPTPPMATKNPLSLLCSLLTNPSSILPRRLPLLALMSALSRASITNWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLQGRYGMAFLVFSVSNFVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRALLVKVEKCPFVAIIFHDGCRGCDFPSYHLKDLLPVIALAFIGGILGSLYNFLLNKVLRIYNLIHEKGIAYKILLACFISIFTSCLLFGLPWFAPCQPCPSSAQEICPTIGRSGNFKKFQCAPSHYNDLASLIFNTNDDAIKNLFSKATESEFQFSSMLIFFIACFSLSIISYGTVAPVGLFVPVIVTGASYGRFVGMVVSPYTNLSHGFFAVLGAASFLGGTMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADGFNCNIYNQIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLFRGIEKVRDVVSVLKWTSHHGFPVVDEPPFSEFPVLYGLILRAHLIILLKKKAFLSSVPTLGKDALKLFSADDFSKMGSGDIDRIEDVQLTNEEMDMFIDLRPFANTSPCTVLETMTLAKALEIFRETGLRHMLVIPKVPRRLPVVGVLTRHDFMPDYILSLHPLLEKSRWKRLRIKFHLKNKFF 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31054188 31062394 - Sed0018919.4 Sed10g1468 727972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1468 668 SMART cbs_1 480 533 IPR000644 -
Sed10g1468 668 SMART cbs_1 591 644 IPR000644 -
Sed10g1468 668 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 207 639 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Sed10g1468 668 MobiDBLite consensus disorder prediction 1 31 - -
Sed10g1468 668 Gene3D Clc chloride channel 79 197 - -
Sed10g1468 668 ProSiteProfiles CBS domain profile. 588 648 IPR000644 -
Sed10g1468 668 Gene3D Clc chloride channel 198 460 - -
Sed10g1468 668 SUPERFAMILY Clc chloride channel 84 462 IPR014743 -
Sed10g1468 668 Pfam CBS domain 590 638 IPR000644 -
Sed10g1468 668 MobiDBLite consensus disorder prediction 1 24 - -
Sed10g1468 668 Gene3D - 461 640 IPR046342 -
Sed10g1468 668 CDD CBS_pair_voltage-gated_CLC_euk_bac 472 640 - -
Sed10g1468 668 Pfam Voltage gated chloride channel 207 441 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g1468 668 SUPERFAMILY CBS-domain pair 463 638 IPR046342 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1466 Sed-Chr10:31054188 Sed10g1468 Sed-Chr10:31054188 0.00E+00 dispersed
Sed10g1468 Sed-Chr10:31054188 Sed13g1106 Sed-Chr13:10076534 6.00E-178 dispersed
Sed10g1467 Sed-Chr10:31054188 Sed10g1468 Sed-Chr10:31054188 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1468 K05016 - csv:101216071 793.112