Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1594 ATGGGCTGCATTTGCTCAAGAGATTCATCAGAACCAGAGGAGGGAAGTAAAAAAGAGTCGGAAATCGAAAAGGATTCGAACAAATCTTCAGTTCAATTGGTTGCTCCTTCTTGCTCAAAAGGAAATGATTTGTTGTTAGAGATTGAGTTGTCAAGGCAGGCTTCTAAAGCAAATGGGGGTTCTGTTCATAAAACAAAGGCCAATGGAGGGTCTGTTCATAGAGTTGAGGATGAGGAATCTGTGAATAAGTCCACAAAGTCTGCAAAAACAAATAATGATAATGCTTCAGCAGGTGGAAAACAGCCTGACATTTTTAGGTTAGCTAGCTTGTCTAAAGAGGCTGAAGCTGAACTTGTCGCGGCTGGATGGCCTTCGTGGTTAGTTTCTGTTGCTGGAGAAGCCATTAAAGGGTGGGTGCCACGCCGGATCGACTCCTTTGAGAAGTTAGACAAAATTGGACAGGGAACTTACAGCAGTGTATACAGAGCCCGTGACCTTGAAACTGGTAAAACTGTGGCATTGAAAAAAGTGAGATTTGTGAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGTGTCTAGTTACTTCCAAAATGTCGGGCAGCTTGTACCTTGTTTTCGAGTACATGGAGCATGACCTTGCAGGCCTTGCAGCAGCTCCTGGACATAAGTTTACTGAGGCTCAGATCAAATGTTATGTGCAACAATTAATGCATGGACTCGAACACTGTCATAGTCGGGGAATTCTGCACCGAGATATCAAAGGTTCAAATCTTCTTGTTGACAATAATGGTGTGCTCAAGATTGGAGACTTTGGTCTTGCTACTTTTTTTCAGCCTGATCAAAAGCAGCCATTGACAAGTCGAGTAGTGACGTTGTGGTACAGGGCACCTGAGCTCTTGCTCGGTGCTACCGAATATGGACCTGCCATAGATCTCTGGAGTTGTGGCTGTATCGTTGCTGAACTATTTGCTGGAAAACCCATCATGCCGGGAAGAACTGAGGTGGAACAAATGCACAAGATTTTTAAGCTCTGCGGTTCACCGTCTGAGGAGTTCTGGAAGAGAACAAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACGTTCAAAAGTTTCCCTTCTTCAGCTCTTGCTATTGTTACTAAACTACTTGCTATTGAACCAGAGCACAGAGGATCAGCTGCTTCAGCTCTCAGAAGTGAGTTTTTCAGAACAGAACCGCTCCCTTGTGACCCCTCAAGCTTACCAAAATATCCTCCAAGCAAGGAATTTGATGCCAAGCTGCGGAATGAAGAAGAAAGAAAGAGAAAGGCAGATGCTGTGAAGGGACGCCATCCTGAATCAGTAAGAAGGGGCTCGAGAGAGACCAAGGCAGCTCCGACTCCTGAATTCAATACAAAAGGAGACATTTCGATGAAGGTACACCCGATCACGAAGAAGTTAAGTACTGCATACAACGGTCAAGACAACAATGAGTCTTCGAGAGTTCTGCAGAATCGGTATGCCCATTCAACATCTATGGTGCACCCAAGTATTGCAAGTTCATGGTGTAAACCTACTGGGGCCTCAAGAAATGGGGCAGAATTAAAGACACAGAAATCTCAGATACAAAATTCAGTTGGAGATTTGTCAACCTCTTCTCACAGGAAGGAAGACAGTGTGTCTATTAAAAATTCTGGAATGGTCTTTGCCCAAAAGAACAGAATACATTACTCAGGACAATTGGTGCCTGCCGGAGGAACCATTGAAGACATGCTGAAAGAGCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGAATCGACAAAGCAAAGACGAACAATACTGGCGATGATCATCTTTGA 1929 44.12 MGCICSRDSSEPEEGSKKESEIEKDSNKSSVQLVAPSCSKGNDLLLEIELSRQASKANGGSVHKTKANGGSVHRVEDEESVNKSTKSAKTNNDNASAGGKQPDIFRLASLSKEAEAELVAAGWPSWLVSVAGEAIKGWVPRRIDSFEKLDKIGQGTYSSVYRARDLETGKTVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLECLVTSKMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLMHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWKRTKLPHATSFKPQHRYKSCLSETFKSFPSSALAIVTKLLAIEPEHRGSAASALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKRKADAVKGRHPESVRRGSRETKAAPTPEFNTKGDISMKVHPITKKLSTAYNGQDNNESSRVLQNRYAHSTSMVHPSIASSWCKPTGASRNGAELKTQKSQIQNSVGDLSTSSHRKEDSVSIKNSGMVFAQKNRIHYSGQLVPAGGTIEDMLKEHERQIQQAFRKARIDKAKTNNTGDDHL 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32478506 32483718 - Sed0022122.1 Sed10g1594 728098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1594 642 MobiDBLite consensus disorder prediction 69 84 - -
Sed10g1594 642 MobiDBLite consensus disorder prediction 10 26 - -
Sed10g1594 642 Gene3D Transferase(Phosphotransferase) domain 1 229 470 - -
Sed10g1594 642 FunFam probable serine/threonine-protein kinase At1g54610 133 228 - -
Sed10g1594 642 SUPERFAMILY Protein kinase-like (PK-like) 139 438 IPR011009 -
Sed10g1594 642 MobiDBLite consensus disorder prediction 54 100 - -
Sed10g1594 642 Pfam Protein kinase domain 146 430 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1594 642 MobiDBLite consensus disorder prediction 550 580 - -
Sed10g1594 642 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524(InterPro)
Sed10g1594 642 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Sed10g1594 642 SMART serkin_6 146 430 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1594 642 ProSiteProfiles Protein kinase domain profile. 146 430 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1594 642 MobiDBLite consensus disorder prediction 1 33 - -
Sed10g1594 642 MobiDBLite consensus disorder prediction 550 571 - -
Sed10g1594 642 MobiDBLite consensus disorder prediction 436 496 - -
Sed10g1594 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1594 642 MobiDBLite consensus disorder prediction 449 484 - -
Sed10g1594 642 CDD STKc_CDK9_like 146 430 - -
Sed10g1594 642 Coils Coil 613 633 - -
Sed10g1594 642 PANTHER CELL DIVISION PROTEIN KINASE 145 430 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed10g1594 642 FunFam probable serine/threonine-protein kinase At1g54610 229 470 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0027 Sed-Chr2:4187800 Sed10g1594 Sed-Chr10:32478506 3.20E-187 dispersed
Sed10g1594 Sed-Chr10:32478506 Sed12g0863 Sed-Chr12:5354875 2.30E-158 dispersed
Sed10g1594 Sed-Chr10:32478506 Sed04g1587 Sed-Chr4:30652697 3.90E-174 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79861 PF00069 Pkinase 4.50E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1594 K08819 - csv:101208709 1091.26