Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1609 | ATGGGAGAACCAAGCTCAATGGAGAGCCATGGCGCGGCGACATCGAGCTATCGAGGTGTTCGGAAGAGAAAATGGGGGAAATGGGTGTCTGAGATTCGCGAGCCGGGAAAGAAGACGAGAATATGGTTGGGGAGTTTCGAGACCCCGGAGATGGCAGGGGCGGCCTATGACTGTGCTGCCTACCACTTCCGTGGTCGCGATGCCCACCTCAACTTCCCACATCTTGTCAACTCTCTTCCCTTCCCTCTTGGCTCATCCCCCGATGACATTCGCTTTGCTGCCCAAGAGGCAGCGTTGCTGTTACGGGAGATGTCTGTTGTTGGGCCCGAGGGAAGTGGAACTTCTGGCTCGGGGCTGGCCCCGGTCACCGTGCGGCTTTCCCCGAGTCAAATTCAAGCCATTAACGAGTCGACGTTGGATTCGCCGAAGATGTGGATGCAAATGTCGTCTGAGAGTTTGCTGATGGATGAGTATCCAAATGCTACTGTGTTTGACAATGGCATGGACGATGAGATGTGGGAGAATATGCATAATGATTCACTATGGGATCCTTAA | 555 | 53.87 | MGEPSSMESHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAGAAYDCAAYHFRGRDAHLNFPHLVNSLPFPLGSSPDDIRFAAQEAALLLREMSVVGPEGSGTSGSGLAPVTVRLSPSQIQAINESTLDSPKMWMQMSSESLLMDEYPNATVFDNGMDDEMWENMHNDSLWDP | 184 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 32648229 | 32649466 | + | Sed0016894.1 | Sed10g1609 | 728113 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1609 | 184 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 14 | 138 | IPR051032 | - | |
Sed10g1609 | 184 | FunFam | Ethylene-responsive transcription factor 2 | 15 | 74 | - | - | |
Sed10g1609 | 184 | CDD | AP2 | 15 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1609 | 184 | ProSiteProfiles | AP2/ERF domain profile. | 16 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1609 | 184 | SUPERFAMILY | DNA-binding domain | 15 | 74 | IPR016177 | GO:0003677(InterPro) | |
Sed10g1609 | 184 | SMART | rav1_2 | 16 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1609 | 184 | Gene3D | AP2/ERF domain | 16 | 75 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1609 | 184 | PRINTS | Ethylene responsive element binding protein signature | 17 | 28 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1609 | 184 | PRINTS | Ethylene responsive element binding protein signature | 39 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1609 | 184 | Pfam | AP2 domain | 16 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g1609 | Sed-Chr10:32648229 | Sed11g0054 | Sed-Chr11:512499 | 3.60E-24 | dispersed | |
Sed10g1609 | Sed-Chr10:32648229 | Sed10g1614 | Sed-Chr10:32751299 | 1.50E-46 | proximal | |
Sed10g1609 | Sed-Chr10:32648229 | Sed11g1821 | Sed-Chr11:33024469 | 2.90E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39829 | PF00847 | AP2 | 6.30E-12 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1609 | - | - | - | 0.0 |