Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1609 ATGGGAGAACCAAGCTCAATGGAGAGCCATGGCGCGGCGACATCGAGCTATCGAGGTGTTCGGAAGAGAAAATGGGGGAAATGGGTGTCTGAGATTCGCGAGCCGGGAAAGAAGACGAGAATATGGTTGGGGAGTTTCGAGACCCCGGAGATGGCAGGGGCGGCCTATGACTGTGCTGCCTACCACTTCCGTGGTCGCGATGCCCACCTCAACTTCCCACATCTTGTCAACTCTCTTCCCTTCCCTCTTGGCTCATCCCCCGATGACATTCGCTTTGCTGCCCAAGAGGCAGCGTTGCTGTTACGGGAGATGTCTGTTGTTGGGCCCGAGGGAAGTGGAACTTCTGGCTCGGGGCTGGCCCCGGTCACCGTGCGGCTTTCCCCGAGTCAAATTCAAGCCATTAACGAGTCGACGTTGGATTCGCCGAAGATGTGGATGCAAATGTCGTCTGAGAGTTTGCTGATGGATGAGTATCCAAATGCTACTGTGTTTGACAATGGCATGGACGATGAGATGTGGGAGAATATGCATAATGATTCACTATGGGATCCTTAA 555 53.87 MGEPSSMESHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAGAAYDCAAYHFRGRDAHLNFPHLVNSLPFPLGSSPDDIRFAAQEAALLLREMSVVGPEGSGTSGSGLAPVTVRLSPSQIQAINESTLDSPKMWMQMSSESLLMDEYPNATVFDNGMDDEMWENMHNDSLWDP 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32648229 32649466 + Sed0016894.1 Sed10g1609 728113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1609 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 138 IPR051032 -
Sed10g1609 184 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Sed10g1609 184 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1609 184 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1609 184 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
Sed10g1609 184 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1609 184 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1609 184 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1609 184 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1609 184 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1609 Sed-Chr10:32648229 Sed11g0054 Sed-Chr11:512499 3.60E-24 dispersed
Sed10g1609 Sed-Chr10:32648229 Sed10g1614 Sed-Chr10:32751299 1.50E-46 proximal
Sed10g1609 Sed-Chr10:32648229 Sed11g1821 Sed-Chr11:33024469 2.90E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39829 PF00847 AP2 6.30E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1609 - - - 0.0