Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1614 ATGGAACCAAGTTATAGAGGAGTCCGCAAGCGCAAATGGGGCAAATGGGTGTCCGAAATCCGCGAGCCCGGCAAAAAAACCCGAATCTGGCTCGGCAGTTACGACCTCCCCGAGATGGCTGCCGCTGCCTACGATGTCGCCGCGCTCTTCCTCCGTGGCACGGACGCCCGCCTCAACTTCCCCGAGCTCGCACATTCCTTCCCTCGCCCCCCGACCTCCACCCCCGAGGACATCCAGACCACGGCGCAGATGGCTGCATTGCAGATGAGGAACCATAATAATAATAATAATACCAATAAGCCGGCCGGGGCGCCGGGCCCGGTTCGAGTCGGGCTGTCGCCGAGCCAAATTCAAGCCATTAACGAGTCGCCGTTGGACTCTCCAACGATGTGGATGCAGATGGCGGCGGAGGCGCTGTGTTTAGAGGAAGAGTCGTCTGTGTTTTCATGTGATGGGTTTGAGGAGTGGGAGGATCATGACATGCACCATCACTCTATTTGGGATTCTTCACTCTAA 516 57.36 MEPSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYDLPEMAAAAYDVAALFLRGTDARLNFPELAHSFPRPPTSTPEDIQTTAQMAALQMRNHNNNNNTNKPAGAPGPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALCLEEESSVFSCDGFEEWEDHDMHHHSIWDSSL 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32751299 32752091 + Sed0026632.1 Sed10g1614 728118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1614 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 101 IPR051032 -
Sed10g1614 171 Pfam AP2 domain 3 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1614 171 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677(InterPro)
Sed10g1614 171 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1614 171 SMART rav1_2 4 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1614 171 CDD AP2 3 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1614 171 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1614 171 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1614 171 FunFam Ethylene-responsive transcription factor 2 3 62 - -
Sed10g1614 171 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1614 Sed-Chr10:32751299 Sed11g1821 Sed-Chr11:33024469 2.50E-40 dispersed
Sed10g1609 Sed-Chr10:32648229 Sed10g1614 Sed-Chr10:32751299 1.50E-46 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39830 PF00847 AP2 7.90E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1614 - - - 0.0