Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1645 ATGGTGAACGAAGAAGTTGAGAATGGAGTAAACGATATGGTGATTGATGGTAATGAACAGAAGCCGGAGAACATTGTGGCTGATGGGTTCGATGCTAATTGTCTCAAAATTTACTACGGGAAGCTTTTTCCGTATGGTGATTTTTTCAAGTGGATGTCTTATGGAAATGATGGAAAGCATCCAGGCAGTGACCAATCCTATTTTGGCCGAAGAGAGTTCTCTTTCACGTTGGATAATGATATTTATCTACGATTCCAATCTTTCAACAGTTTGCCTGAAATGGAAAATTCCATCAAGGAAAAGTGTCCGTTTAAAATTGATATTGGGCCTGTATACAGCGTGGATCCTGCAAAGAGACACGCATATGCTGGTGATAATGTATTTACTCCAGTGGAGAGAGAACTGGTTTTTGATATAGATATGACTGACTACGATGATGTTAGATATTGTTGTTCAGGAGCTGATGTTTGCTTGAATTGTTGGCCTTTAATGACTGCTGCTATCAAAGTAATTGATACTGCCCTTAGAGATGACTTTGGGTTTAGCCACTTGCTCTGGGTATTTAGTGGTCGACGTGGTGTTCATTGTTGGGTCTGTGATGGCAAAGCCAGGAGGTTATCCAATGAACAGAGAGCTTCTGTTGCTGATTATTTCCATTTATATCAGGGTAATGAAAATAATCGTAAGAAAGTTTCTCTCGTGGGTCCTGTTCTTCATCCTTTTCTTGCGAGATCATATGCAGAAGTTCTCGAGGATAGCTTTGAATCAAAATTGCTTTGTAGCCAGGAGATTTTCTCTACTGAGGAGAGATATGAAAAAGTATTAGATATGATTCATGACGAATCCATTACTTCAGAGCTACGAGGAAGGTGGCAAGAGAATAGGCGAGCCTCTAAAAAAGATGTTAATTCTGTTAGATGGGAACAACTAAAAAATACATTACAATCAGGAAAACATAAGGTACAAGGAGTGCGTAGGCACGTTGAAGAAATTGTTTTCTCTTTTACCTACCCTAGGCTTGATTTGGAGGTTACTAAACATATGAACCATCTTCTAAAAGCACCATTCTGTGTACATCCCAAAACAGGTCGTGTTTGTGTCCCTATCAACCCTGAACGATGTGACGAGTTTGATCCAACTAGTGTACCAACTCTTGCCCAGCTCCTCGAAGAACTTAATGCAGTAGATATGAAAGTAGACGGTGAGACTGACTGGGATAAAACCTCGCTCAGGGAATCAATTCGGTTTTTCAGATCGTCGTTCTTACAGCCATTACTGAAATCATGCAAGGAGGAAATAGAATCTTCATACAATGCCAAAGTGCAACAGTCAAAAAATTCTATTAGTTGGTAG 1353 39.84 MVNEEVENGVNDMVIDGNEQKPENIVADGFDANCLKIYYGKLFPYGDFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNSLPEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLNCWPLMTAAIKVIDTALRDDFGFSHLLWVFSGRRGVHCWVCDGKARRLSNEQRASVADYFHLYQGNENNRKKVSLVGPVLHPFLARSYAEVLEDSFESKLLCSQEIFSTEERYEKVLDMIHDESITSELRGRWQENRRASKKDVNSVRWEQLKNTLQSGKHKVQGVRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRVCVPINPERCDEFDPTSVPTLAQLLEELNAVDMKVDGETDWDKTSLRESIRFFRSSFLQPLLKSCKEEIESSYNAKVQQSKNSISW 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33092325 33100214 - Sed0005226.2 Sed10g1645 728149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1645 450 Gene3D DNA primase, PRIM domain 24 431 - -
Sed10g1645 450 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 36 390 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Sed10g1645 450 SUPERFAMILY Prim-pol domain 32 398 - -
Sed10g1645 450 FunFam DNA primase 23 431 - -
Sed10g1645 450 Pfam DNA primase small subunit 137 370 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
Sed10g1645 450 PANTHER DNA PRIMASE SMALL SUBUNIT 33 436 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
Sed10g1645 450 CDD AE_Prim_S 44 379 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1644 Sed-Chr10:33092325 Sed10g1645 Sed-Chr10:33092325 4.10E-271 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1645 K02684 - csv:101203146 840.876