Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1648 ATGATGAAGCTTCAGCGATGGTTGTCAAGGAACCAGCTATTTGAACAAGTTGTATGTAAGAAGGCTGGTCATGTTGAACATCCTTTTGGGTCGCATCCTTTCTCATCCCGAGTTGCTATTCCAGATTCTAGACAAAATTTTACTCCTACAGTCACAAAGAATGCAAGTGACCGAATTTATGCTTCTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGATACCTTGTCTGCCAACTTTCACTAAGCTAGAGTCTGGGAATCTTGTAATTGATCGACGTGGTTCAGTAATGCTCACATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCACTGTCCGCAACAGAGGTTGGTACTTTAATAAGCTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCCTAACTATTAAGGCTCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTTGCAAAATACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACAGCTTGCAGTTTTGCACTGCCACACATTCTTGGATGGGACCGGCTGACAGAACGTAGTCCTGCTGACATGGGAAAGGTTGCTCAACCAAATAAGGTGAATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 729 42.8 MMKLQRWLSRNQLFEQVVCKKAGHVEHPFGSHPFSSRVAIPDSRQNFTPTVTKNASDRIYASYNVYKGKAGLSMIPCLPTFTKLESGNLVIDRRGSVMLTFFPAIGERKYDWTKKQLFALSATEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNLQNTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTERSPADMGKVAQPNKVNREALSLEWER 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33128356 33136287 - Sed0012193.1 Sed10g1648 728152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1648 242 SUPERFAMILY ssDNA-binding transcriptional regulator domain 56 221 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed10g1648 242 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Sed10g1648 242 Gene3D Transcriptional Coactivator Pc4; Chain A 51 221 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed10g1648 242 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 23 242 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1648 K26561 - - csv:101219085 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1728 Sed-Chr8:32240759 Sed10g1648 Sed-Chr10:33128356 1.30E-41 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g1728 . 46 274 Whirly Transcription Factor Family AT1G14410 66.8 4.7e-86 315.5
Sed10g1648 . 56 242 Whirly Transcription Factor Family AT1G71260 60.1 6.9e-60 228.4
Sed08g1728 . 74 274 Whirly Transcription Factor Family AT2G02740 72.3 5.9e-84 308.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39831 PF08536 Whirly 9.10E-54 CL0609 Sed TF