Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1648 | ATGATGAAGCTTCAGCGATGGTTGTCAAGGAACCAGCTATTTGAACAAGTTGTATGTAAGAAGGCTGGTCATGTTGAACATCCTTTTGGGTCGCATCCTTTCTCATCCCGAGTTGCTATTCCAGATTCTAGACAAAATTTTACTCCTACAGTCACAAAGAATGCAAGTGACCGAATTTATGCTTCTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGATACCTTGTCTGCCAACTTTCACTAAGCTAGAGTCTGGGAATCTTGTAATTGATCGACGTGGTTCAGTAATGCTCACATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCACTGTCCGCAACAGAGGTTGGTACTTTAATAAGCTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCCTAACTATTAAGGCTCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTTGCAAAATACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACAGCTTGCAGTTTTGCACTGCCACACATTCTTGGATGGGACCGGCTGACAGAACGTAGTCCTGCTGACATGGGAAAGGTTGCTCAACCAAATAAGGTGAATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA | 729 | 42.8 | MMKLQRWLSRNQLFEQVVCKKAGHVEHPFGSHPFSSRVAIPDSRQNFTPTVTKNASDRIYASYNVYKGKAGLSMIPCLPTFTKLESGNLVIDRRGSVMLTFFPAIGERKYDWTKKQLFALSATEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNLQNTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTERSPADMGKVAQPNKVNREALSLEWER | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33128356 | 33136287 | - | Sed0012193.1 | Sed10g1648 | 728152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1648 | 242 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 56 | 221 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed10g1648 | 242 | Pfam | Whirly transcription factor | 65 | 199 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Sed10g1648 | 242 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 51 | 221 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed10g1648 | 242 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 23 | 242 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g1728 | Sed-Chr8:32240759 | Sed10g1648 | Sed-Chr10:33128356 | 1.30E-41 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39831 | PF08536 | Whirly | 9.10E-54 | CL0609 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1648 | K26561 | - | csv:101219085 | 384.8 |