Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1648 ATGATGAAGCTTCAGCGATGGTTGTCAAGGAACCAGCTATTTGAACAAGTTGTATGTAAGAAGGCTGGTCATGTTGAACATCCTTTTGGGTCGCATCCTTTCTCATCCCGAGTTGCTATTCCAGATTCTAGACAAAATTTTACTCCTACAGTCACAAAGAATGCAAGTGACCGAATTTATGCTTCTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGATACCTTGTCTGCCAACTTTCACTAAGCTAGAGTCTGGGAATCTTGTAATTGATCGACGTGGTTCAGTAATGCTCACATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCACTGTCCGCAACAGAGGTTGGTACTTTAATAAGCTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCCTAACTATTAAGGCTCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTTGCAAAATACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACAGCTTGCAGTTTTGCACTGCCACACATTCTTGGATGGGACCGGCTGACAGAACGTAGTCCTGCTGACATGGGAAAGGTTGCTCAACCAAATAAGGTGAATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 729 42.8 MMKLQRWLSRNQLFEQVVCKKAGHVEHPFGSHPFSSRVAIPDSRQNFTPTVTKNASDRIYASYNVYKGKAGLSMIPCLPTFTKLESGNLVIDRRGSVMLTFFPAIGERKYDWTKKQLFALSATEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNLQNTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTERSPADMGKVAQPNKVNREALSLEWER 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33128356 33136287 - Sed0012193.1 Sed10g1648 728152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1648 242 SUPERFAMILY ssDNA-binding transcriptional regulator domain 56 221 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed10g1648 242 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Sed10g1648 242 Gene3D Transcriptional Coactivator Pc4; Chain A 51 221 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed10g1648 242 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 23 242 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1728 Sed-Chr8:32240759 Sed10g1648 Sed-Chr10:33128356 1.30E-41 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39831 PF08536 Whirly 9.10E-54 CL0609 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1648 K26561 - csv:101219085 384.8