Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1659 ATGTCGAAGTCCACTAGAATCAACCATATAGCATCTTCAACCTCCACATCTAGTGTTCACCATTTACACAAAATTTTCCATTCTCCACTCTTGGCTTCTGCTTCTTTGGCTATGGCTTCCCTAGCAGCCTCCACCGCCGCCGCCTCCCTCGGGGTTTCGGAAATGCTGAGGAATCCCCTCAGCTTTTCCGGAACTTCGGGGAGGTTGGCCCCCTCGGCTTCTAATCCCATGGCCTCCAAGACTGTTGCATTTTTTAAGAAGAAGCCGGGTGTCGCTCCCAAGGCAAAGCCCTCCGCCGCCGCCCCGGTCGACGACGAGCTCGCCAAGTGGTATGGTCCTGACAGAAGGATTTTCTTGCCCGATGGGCTGTTGGACCGATCCGAAATCCCTGAGTACTTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTTGGACTCAGCAAGAAACCAGAAGATTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAGTACGGCGCCAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTTGTTCTCGCGGTCATTGCCGAGGTTGTTCTTGTTGGTGGTGCTGAATATTACAGAATCACCAATGGCTTGAACCTTGAGGACAAGCTTCACCCGGGAGGGCCATTTGACCCGTTGGGGCTGGCAGACGATCCCGACCAGGCGGCAATCTTGAAGGTGAAGGAGATAAAGAATGGAAGATTGGCGATGTTTGCGATGCTCGGGTTTTTCATCCAGGCTTACGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCCAAGCATTTAAGTGACCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA 987 51.77 MSKSTRINHIASSTSTSSVHHLHKIFHSPLLASASLAMASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKPSAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33259814 33262332 - Sed0007613.1 Sed10g1659 728163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1659 328 Pfam Chlorophyll A-B binding protein 130 291 IPR022796 -
Sed10g1659 328 FunFam Chlorophyll a-b binding protein, chloroplastic 117 328 - -
Sed10g1659 328 SUPERFAMILY Chlorophyll a-b binding protein 110 318 - -
Sed10g1659 328 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 65 323 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed10g1659 328 Gene3D Chlorophyll a/b binding protein domain 117 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1659 Sed-Chr10:33259814 Sed14g1562 Sed-Chr14:23798355 1.60E-59 dispersed
Sed10g1659 Sed-Chr10:33259814 Sed10g0155 Sed-Chr10:959200 5.50E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1659 K08916 - csv:101218137 505.753