Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1676 ATGGATACTAAAGGGAGACTCATTGCTGGTTCTCACAACAGAAATGAATTTGTTCTCATCAATGCGGATGAGGTTGCAAGAGTAACATCTGTGAAAGAGTTGAGTGGGCAACTTTGCCAGATCTGTGGAGATGAGGTAGAAGTCACCGTTGGTGGAGAGCCATTTGTTGCTTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACTAGATACAAGCGTCTCAAAGGTAGTCCTCGGGTTGAAGGCGATGAAGAAGAAGAAGATATCGATGATCTGGAGCACGAGTTTGACATTGCAAACAAAGATCCTAACAGTGTATCTGAAGCAATGCTCTATCCTCACTTTGCAGTCGGTCGCGGTTCTCATGCTAATGGTTCTGGAAATATGGCTTCTGACCTTGACTCCTCATCCGTCCCAACTGATATCCCTCTCCTCACCTATGACCAAGAGGATGCTGGGATTTCCTCGGATAAGCATGCTTTAATTATTCCTCCTTTTATTAGCCGTGGGAAGAAGGTCCATCCGGCGCCATTCTCTGATTCTTCCATGTCTGCCAATCCAAGGCCAATGGATCCAAAAAAAGATTTAGCTGTTTATGGATATGGAACTGTTGCATGGAAGGAAAGAATGGAGGACTGGCGGAAGAAGCAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGAGGTGGAAAAGGCGATGATGAGTTCGACGATGCAGATTTGCCTATGATGGACGAAGGAAGGCAACCACTTTCCAGAAAATTACCCATCTCCTCGAGCAAAATTAATCCATACAGAATGATAATTGTACTTCGAATTGTCGTCCTTTGCCTCTTTTTCCACTATCGTATCCTTCATCCTGTCCATGAAGCATATGGGTTGTGGTTAACATCAGTCATCTGTGAGATATGGTTTGCTGCTTCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTTCGAGAAACTTATCTTGATCGGTTATCGTTAAGATATGAGAAAGATGGCAAGCCATCGGAGTTGGCTTCTGTAGACATTTATGTCAGTACGGTGGATCCTATGAAGGAGCCTCCTCTTATCACAGCAAATACCGTCCTGTCTATTCTTGCCGTCGATTATCCAGTAGACAAGGTTTCATGCTACGTTTCTGATGACGGTGCTGCCATGCTTACCTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGGAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGGGCCCCAGAATGGTATTTTCTCCAGAAGGTTGACTATTTGAAAGACAAAGTTGATCCAACATTTGTCCGGGAACGACGTGAAATGAAGAGAGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTTCCATGGCTCAAAAAGTTCCTGAAGATGGATGGACAATGCAGGACGGAACTCCATGGCCCGGGAACAATGTTAGGGATCATCCTGGAATGATTCAGGTATTTCTCGGTCAAAATGGGGTTCGGGACTTGAACGGAAATGAATTACCTCGTCTAGTCTATGTCTCTCGTGAGAAGAGGCCTGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATGCTCTGATGCGTGTCTCGGCAATCATCTCGAATGCTCCATACATGTTGAATGTCGATTGTGATCACTACATCAACAACAGCAAGGCACTTAGAGAAGCTATGTGCTTCATGATGGACCCAATTTCAGGAAAAAGAATATGCTATGTGCAGTTTCCACAACGGTTTGATGGGATTGATAGGCACGATCGATACTCAAATCGCAATGTTGTATTCTTCGATATCAACATGAAAGGATTAGACGGTATTCAAGGGCCGATTTATGTCGGAACTGGGTGCGTCTTCAGAAGGCAAGCTCTCTATGGGTATGATGCTCCTACCAAAAAGAAAGCACCAAGAAGAACTTGCAATTGCCTGCCAAAATGGTGCTACTGTTGCTGTGGAACTAGAAAGAAGACCAAAGCAAAGACCAGTGATAAAAAGAAGTTGAAAACCAAAGATACGTCGAAGCAGATTCATGCACTTGAAAACATTGAGGAAGGAATTGAAGGAATAGATAATGAGAAATCATCTTTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCGCCATCTTTCATTGCTTCAACACTTATGGAAGATGGTGGCGTGCCCGGAGGAGGGACATCTGCTTCATTGTTGAAAGAAGCCATCCACGTAATCAGCTGTGGTTATGAAGATAAAACCGAGTGGGGTAAAGAGGTAGGGTGGATATATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGCCATGGATGGAGATCAGTTTATTGCATTCCTAAACTGGCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTTCACCAAGTTCTTCGGTGGGCTCTTGGATCTGTTGAGATTCTGTTGAGTAGGCATTGCCCAATATGGTATGGATACGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCGTACATAAACTCCGTTGTTTATCCATTGACATCGATTCCATTGATTGCTTATTGTACCCTGCCAGCTGTCTGCCTGCTTACTGGACAGTTTATCGTCCCCGAGCTAAGCAACTATGCCAGCATCATTTTCATAGCCCTTTTCATCTCTATAGCAGCAACTGGTATTCTAGAGATGCAGTGGGGAGGTGTCGGGATTCACGATTGGTGGAGAAACGAGCAGTTCTGGGTTATCGGTGGTGCTTCGTCCCATCTTTTTGCGCTTTTTCAGGGTCTGCTTAAGGTTTTGGCTGGTGTTAACACAAATTTCACTGTCACATCAAAGGGAGGAGACGATGGGGACTATGCCGAGCTTTACCTCTTCAAGTGGACATCGTTGTTAATCCCTCCCTTGACCTTATTGATTATAAACATTATCGGAGTAGTTGTCGGAGTTTCAGATGCCATCAACAACGGTTACGAGTCATGGGGCCCGCTCATCGGTAAGATGTTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTTCCAACCATTATCATCGTGTGGTCAATTCTTCTATCATCCATTCTGTCGCTGTTATGGGTCCGAATCAACCCCTTCCTCGACAGGGGAGGCATTGTATTGGAAGTTTGCGGGTTAAACTGTGACGGCTAG 3273 44.36 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQLCQICGDEVEVTVGGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEEDIDDLEHEFDIANKDPNSVSEAMLYPHFAVGRGSHANGSGNMASDLDSSSVPTDIPLLTYDQEDAGISSDKHALIIPPFISRGKKVHPAPFSDSSMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDEFDDADLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVVLCLFFHYRILHPVHEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASVDIYVSTVDPMKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFLQKVDYLKDKVDPTFVRERREMKRDYEEFKVRINGLVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLNGNELPRLVYVSREKRPGFDHHKKAGAMNALMRVSAIISNAPYMLNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPTKKKAPRRTCNCLPKWCYCCCGTRKKTKAKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPSFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKLAAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGQFIVPELSNYASIIFIALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGDYAELYLFKWTSLLIPPLTLLIINIIGVVVGVSDAINNGYESWGPLIGKMFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDRGGIVLEVCGLNCDG 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33333406 33340057 - Sed0026377.1 Sed10g1676 728180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1676 1090 CDD mRING-HC-C4C4_CesA 37 87 - -
Sed10g1676 1090 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 283 1058 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Sed10g1676 1090 FunFam Cellulose synthase 480 654 - -
Sed10g1676 1090 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Sed10g1676 1090 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 883 IPR029044 -
Sed10g1676 1090 FunFam Cellulose synthase 21 112 - -
Sed10g1676 1090 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Sed10g1676 1090 Coils Coil 99 119 - -
Sed10g1676 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 111 IPR013083 -
Sed10g1676 1090 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 509 655 IPR029044 -
Sed10g1676 1090 Pfam Cellulose synthase 363 1076 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Sed10g1676 1090 SUPERFAMILY RING/U-box 28 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0473 Sed-Chr10:3016469 Sed10g1676 Sed-Chr10:33333406 0.00E+00 dispersed
Sed10g1676 Sed-Chr10:33333406 Sed14g0208 Sed-Chr14:2351148 0.00E+00 dispersed
Sed10g1676 Sed-Chr10:33333406 Sed11g1757 Sed-Chr11:32617670 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1676 K10999 - csv:101214061 2110.49