Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1693 ATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCAAAGCTCCTTCCGACGGTCCGAATCTCCCGAACCACTCCAGTGAACCTCTCCTTCTCCGCCACTTTTCCGTCTCGCGGACTCCGCCTCCGCCTCCGCCACCACCGCGCTCGCGGCGGCGCTAAAATGTCCGCCACCGCCGCCGGAAGCTACGCCAACGCGCTCGCCGAAGTGGCCGCCTCGAGCAACACGCTGGACGCCACCAGCGCCGACGTCGAGAAGATCGGGACGCTATTCGCGGACTCGCAGGTGCTCGATTTCTTCTCGAATCCGACGATCAGCATCGAGAAGAAACGACTGGTCGTGGATGAGATCGCGTCGTCCTCGTCGCTACAGCCGCACTCGGCGAATTTCTTGAAGGTCCTCGTCGATTCGAAGCGGATCGACATCGTGAAGGAGATCGTGACGGAGTTCGAACTGGTGTACAACAAATTGACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCAAAGCAGGTGCAGAAATTGAGCGGAGCCAAGAACGTGAGGATCAAGACGCAGATCGATCCAAGCCTTGTGGCTGGATTCACTGTCAGGTTTGGCAATGCTGGATCCAAACTTATTGATTTGAGCGTCAAGAAACAGCTCGAGGAAATCGCTGCTCAGCTTGATCTCGGTAACATTCAACTGGCTGTATGA 729 57.75 MAALHQTAASLQAKLLPTVRISRTTPVNLSFSATFPSRGLRLRLRHHRARGGAKMSATAAGSYANALAEVAASSNTLDATSADVEKIGTLFADSQVLDFFSNPTISIEKKRLVVDEIASSSSLQPHSANFLKVLVDSKRIDIVKEIVTEFELVYNKLTNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNAGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33783706 33784918 - Sed0000690.1 Sed10g1693 728197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1693 242 Pfam ATP synthase delta (OSCP) subunit 60 233 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed10g1693 242 Gene3D - 59 151 IPR026015 -
Sed10g1693 242 PRINTS ATP synthase delta subunit signature 190 205 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed10g1693 242 PRINTS ATP synthase delta subunit signature 128 139 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed10g1693 242 PRINTS ATP synthase delta subunit signature 59 78 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed10g1693 242 PRINTS ATP synthase delta subunit signature 139 153 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed10g1693 242 PRINTS ATP synthase delta subunit signature 208 226 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed10g1693 242 NCBIfam ATP synthase F1 subunit delta 60 233 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed10g1693 242 Hamap ATP synthase subunit delta [atpD]. 55 235 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed10g1693 242 PANTHER ATP SYNTHASE DELTA CHAIN 30 233 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(PANTHER)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Sed10g1693 242 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 192 211 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Sed10g1693 242 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 56 159 IPR026015 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1693 Sed-Chr10:33783706 Sed12g0075 Sed-Chr12:448563 3.30E-09 dispersed
Sed10g1693 Sed-Chr10:33783706 Sed07g0658 Sed-Chr7:4935964 1.20E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1693 K02113 - csv:101211740 393.66