Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1721 ATGGGGATGGAGCTTTTCAAGGTTTTGGCTCTGTGGTTCGTTTGTTTGATCTTGCTTGTTCGTCCACTATGCCTTGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTCAATCCATGTACATGGTTTCATGTTACATGCAATAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGCTCACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATTTGGAGCTCTACAGTAATAACATAAGTGGAGTTGTTCCTAGTGATCTGGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTACTTGAATCGTTTTTCGGGTCCGATTCCAGACACATTGGGCAAGCTTTCGAAATTGCGGTTCCTCCGGCTGAACAACAACACCTTATCAGGTCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTCTTGGATCTGTCGAATAACCATCTCTCGGGCCCGGTTCCAGATAACGGTTCCTTCTCCTTATTCACTCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGGCCTGTTACTGGACGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCCTTCGTTCCACCGCCGCCTTTATCTACACCAGGAGGCAATAGTGCAACTGGAGCTATTGCTGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTCGCAGCTCCAGCAATTGCATTTGCGTGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTCGACGTTCCTGCCGAAGAGGATCCTGAGGTGCATCTGGGACAGCTTAAACGATTTTCACTAAGAGAACTACAAGTGGCAAGCGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAGGTCTATAAAGGTCGACTGGCTGATGGTACTTTAGTAGCCGTGAAACGACTCAAGGAAGAACGTACACCTGGTGGAGAGCTGCAATTTCAAACGGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGACTACGTGGATTTTGCATGACGCCTACTGAACGACTTCTTGTTTATCCTTATATGGCCAATGGAAGTGTTGCCTCTTGTTTAAGAGAACGACCACCATCCCAACCACCTCTCGATTGGAAAACGAGGAAGCGGATTGCATTGGGATCTGCAAGAGGACTCTCTTATTTGCATGATCACTGCGATCCAAAGATCATTCACCGTGACGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTCGAAGCCGTTGTAGGGGATTTCGGGTTGGCTAAACTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACTATTGGACATATAGCTCCCGAGTATCTTTCTACTGGGAAATCTTCTGAAAAAACAGATGTTTTCGGGTATGGTATCATGCTTCTAGAGCTGATCACTGGACAACGGGCTTTCGATTTGGCTAGACTTGCGAATGATGACGATGTCATGCTACTTGATTGGGTGAAAGGACTCTTGAAAGAGAAGAAGCTAGAAATGCTGGTTGATCCTGACCTTCAGAACAATTATATAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCTCTGCTGTGTACACAAGGCTCCCCGATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTAGAAGGGGACGGGTTGGCAGAGAAATGGGACGAGTGGCAAAAGGTGGAGATTCTTCGACAAGAAATCGACCTATCGCCACATCCGCATTCGGATTGGATTGTAGATTCAACTGAAAATCTTCATGCAGTTGAGCTATCAGGTCCAAGATGA 1884 45.7 MGMELFKVLALWFVCLILLVRPLCLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGSLVPQLGLLKNLQYLELYSNNISGVVPSDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNTLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPLSTPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVASDSFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWKTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAEKWDEWQKVEILRQEIDLSPHPHSDWIVDSTENLHAVELSGPR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34204923 34211706 - Sed0011886.1 Sed10g1721 728225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1721 627 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Sed10g1721 627 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Sed10g1721 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 627 - -
Sed10g1721 627 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Sed10g1721 627 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Sed10g1721 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1721 627 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Sed10g1721 627 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Sed10g1721 627 Pfam Leucine Rich Repeat 144 165 IPR001611 GO:0005515(InterPro)
Sed10g1721 627 Pfam Leucine Rich Repeat 168 186 IPR001611 GO:0005515(InterPro)
Sed10g1721 627 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Sed10g1721 627 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
Sed10g1721 627 CDD STK_BAK1_like 310 581 - -
Sed10g1721 627 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Sed10g1721 627 ProSiteProfiles Protein kinase domain profile. 304 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1721 627 Pfam Protein tyrosine and serine/threonine kinase 307 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1721 627 FunFam Somatic embryogenesis receptor-like kinase 1 381 598 - -
Sed10g1721 627 SMART serkin_6 304 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1721 627 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Sed10g1721 627 SUPERFAMILY L domain-like 31 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0378 Sed-Chr5:2578436 Sed10g1721 Sed-Chr10:34204923 2.10E-61 dispersed
Sed10g1721 Sed-Chr10:34204923 Sed13g0324 Sed-Chr13:2200440 4.50E-228 dispersed
Sed12g1620 Sed-Chr12:27216621 Sed10g1721 Sed-Chr10:34204923 8.00E-31 dispersed
Sed12g1621 Sed-Chr12:27216621 Sed10g1721 Sed-Chr10:34204923 8.70E-31 dispersed
Sed12g1929 Sed-Chr12:30428441 Sed10g1721 Sed-Chr10:34204923 1.10E-69 dispersed
Sed07g0127 Sed-Chr7:1164348 Sed10g1721 Sed-Chr10:34204923 3.40E-29 transposed
Sed08g1027 Sed-Chr8:11392135 Sed10g1721 Sed-Chr10:34204923 2.20E-28 transposed
Sed13g0980 Sed-Chr13:7562481 Sed10g1721 Sed-Chr10:34204923 3.20E-242 transposed
Sed10g1721 Sed-Chr10:34204923 Sed03g0467 Sed-Chr3:2791213 2.30E-52 wgd
Sed10g1721 Sed-Chr10:34204923 Sed07g2892 Sed-Chr7:43545165 4.20E-290 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79864 PF00069 Pkinase 8.20E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1721 K13418 - csv:101208695 1132.09