Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1769 ATGGATCTTGAAGATAGTTTGTGTAGTTCTGATGACTGGACAAAATCTTCATCTTTTCCTAATATTAATGGCCAGCTACCTGAACAGAAATGGGTAGATACTTCCATTTTAGACTATGCTATGGACCAGCCTTTCGAAGAATTCGACAAACAGGCCGAATCGAAGTCCTCTCTCTCCTGTAACTCGAATCAACAAATCGAAATCCTTAATAAAGATGGTGATCAGATGAATGCAGCACTTCTGGCCAATAAAACGCAAGATTGGGACCCGAGAGCGATGCTGAATAATCTCTCTTTCCTTGAGCACAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATTGTTGGTCGTAGGAGCCAAGTCTTGGGGAATCCGGATGAACTCGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCGATTATTGTTCAGTTAATCTCGACTGCGGGTAGTCTGCTTCCTTCTGTAAAGCATAACTTGTCTGCAGCTGTTCCTCCGGTCGGGCAGTTGGAGCAGCTCGACAGGGTTCTTTTTGCATCTGGATTCGGGATGAATAATGGTGTTGCTCAGTCACCATATGGTGATGGAACTAAACATTCAACCCAAATGGACGAAAGTAGCAAGTATGGGAAGGAACAGAACATGACTGTTGAAGAACACGAATCGAAGGATGAAGAAGACGTCGATGAAAGTGAGAATCTCCCGCCCGGTTCATACGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGGGATGCGAATTTACGTATGCACATGAGGGGCCATGGCGACGAGTACAAAACCGCAGCTGCTCTTGCCAAGCCGAACAGAGAACTGAGTTCCGAGACAATGCTAGTTAAGAGGTATTCCTGCCCCTTCACCGGCTGCAAACGGAACAAGGATCATAAGAAGTTTCAGCCTCTGAAAACTATTCTCTGTGTTAAAAACCATTACAAGAGAACTCATTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTCATTGCTGATCTTAAAACACATGAAAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGACGAATCGAAGGGAACAGCCATGTCTTGTGATCGAGGGGAACGCTACGAGACAACGAATAAGCTCGGGAGTATAAATTTAAGTTTCGGGTCAATTGGTTCAGGAGGATGCTCGGTTGAAACCATGGCAGATGCAAAAGGAGGTGTTGATGATCCTCTTAGTTATTTCTCACCTCTGAATTATGATTCGTGTAATTTCGGTGGCTTTCACGAGTTTCCTCGACCGCCATTCGAGAACACGGAGAATGCGTTTTCGTTTCTTATCCCTGCATCTAGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTAATAAACCTGAATGA 1533 44.16 MDLEDSLCSSDDWTKSSSFPNINGQLPEQKWVDTSILDYAMDQPFEEFDKQAESKSSLSCNSNQQIEILNKDGDQMNAALLANKTQDWDPRAMLNNLSFLEHKIHQLQELVHLIVGRRSQVLGNPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPPVGQLEQLDRVLFASGFGMNNGVAQSPYGDGTKHSTQMDESSKYGKEQNMTVEEHESKDEEDVDESENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNRELSSETMLVKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGTAMSCDRGERYETTNKLGSINLSFGSIGSGGCSVETMADAKGGVDDPLSYFSPLNYDSCNFGGFHEFPRPPFENTENAFSFLIPASSNYTQKSGAESSSNKPE 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34767779 34770743 + Sed0009897.1 Sed10g1769 728273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1769 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 284 IPR013087 -
Sed10g1769 510 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 63 489 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Sed10g1769 510 ProSitePatterns Zinc finger C2H2 type domain signature. 259 279 IPR013087 -
Sed10g1769 510 SUPERFAMILY beta-beta-alpha zinc fingers 255 283 IPR036236 -
Sed10g1769 510 Gene3D Classic Zinc Finger 241 315 - -
Sed10g1769 510 SMART c2h2final6 257 279 IPR013087 -
Sed10g1769 510 SMART c2h2final6 306 339 IPR013087 -
Sed10g1769 510 SMART c2h2final6 344 366 IPR013087 -
Sed10g1769 510 MobiDBLite consensus disorder prediction 191 238 - -
Sed10g1769 510 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0851 Sed-Chr10:6368641 Sed10g1769 Sed-Chr10:34767779 2.10E-60 dispersed
Sed10g1769 Sed-Chr10:34767779 Sed11g0732 Sed-Chr11:11413036 3.70E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39836 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1769 - - - 0.0