Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1774 ATGATAAAGCAAGCCCACTCATTGATTCAAATTCCCAACGAAATCAAGTTCTTCAGAAGAAGCATTAACATTAGTATTAGCAGTCTCGGATTGTGTTCTTCAATCCTTCATTCCTCCGCCATCCAAATCAAACCGCTGGGGAATCTCACTTCCACTCGATCCCGCGACCACCATCGCCGGCCGCCCATGGCCGCCGCCGCCGCGGATAATCCTTCACCCTCCTTTTCTTCCTCGAATCGTTTCATCTTCTCCCCCGACTCTCCCCCGACGCTCGCCCTCTCGCCCAACCAGATCAAGCTTTGTTCCGAAGCTCTTCTCGCCTTCCGAGAGAAGCTCCAGACGCCTAGCGTCATCAACCAGGAGTTCGCTCGATTGCAGGCCAAGAGAATAACTGCATCTGATATGAGGAGAAGTTGCTCTGTGGCTCTTGACAATGTCAACATAGATAAAAATCGTTACACAGATGTAATACCTTTTGATGAGACTAGAGTTGTACTGGACTCATGTAAGGATTACAGACCTTCTGCCAGGGGTTATATCAATGCAAGCTTTATTAAGAGTTCCTCCTCAGAAAGCCTTTCTAAGTTTATTGCCACACAAGGTCCATTACCACACACTTACGAGGATTTCTGGGAGATGGTATTTCAGTATGAATGCCCTGCGATCTTGATGCTTACCCGTCTTGTTGATAATTACAGGATGAAGTGTGGAGATTATTTTCAGGCTGAGGATGGTCCTAGAGATTTTGGTAATCTAGTTATCACCTCTAAATGGATTACATCTTCCAACTCCTCTCTTATACTGCGCAATTTGGAGGTGAACCATAAAGAGTCAGAAGAATCTGTGGCTGTTTTGCATATTCAGTACCCAGAATGGCCTGACCATGGAGTCCCTACTGACACACGTGCTGTTCGTGAAATGTTGAAGAGGTTGTATCATTTACCTCCCAATCATGGCCCCATAGTGGTTCACTGCAGTGCAGGTATTGGAAGAACCGGGACATATTGCACAATTCATAACACAATTCAGAGAATCCTTATTGGAGACATGTCTGCTTTAGATCTTGTCAGCACTATTTCCACATTTAGGTTCCAGCGAATTGGAATGGTCCAAACAATGGATCAATACCTTTTCTGCTACCAAGCTATTGTTGATGAACTAGAAGACCTTATAACTGTTCCGCCACAGAAGTTCGAAGCGATAAATAACTGA 1212 45.05 MIKQAHSLIQIPNEIKFFRRSINISISSLGLCSSILHSSAIQIKPLGNLTSTRSRDHHRRPPMAAAAADNPSPSFSSSNRFIFSPDSPPTLALSPNQIKLCSEALLAFREKLQTPSVINQEFARLQAKRITASDMRRSCSVALDNVNIDKNRYTDVIPFDETRVVLDSCKDYRPSARGYINASFIKSSSSESLSKFIATQGPLPHTYEDFWEMVFQYECPAILMLTRLVDNYRMKCGDYFQAEDGPRDFGNLVITSKWITSSNSSLILRNLEVNHKESEESVAVLHIQYPEWPDHGVPTDTRAVREMLKRLYHLPPNHGPIVVHCSAGIGRTGTYCTIHNTIQRILIGDMSALDLVSTISTFRFQRIGMVQTMDQYLFCYQAIVDELEDLITVPPQKFEAINN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34791573 34800037 - Sed0022323.1 Sed10g1774 728278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1774 403 SMART PTPc_3 117 388 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed10g1774 403 Pfam Protein-tyrosine phosphatase 147 384 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed10g1774 403 MobiDBLite consensus disorder prediction 48 73 - -
Sed10g1774 403 SMART ptp_7 283 385 IPR003595 -
Sed10g1774 403 ProSitePatterns Tyrosine specific protein phosphatases active site. 323 333 IPR016130 GO:0016311(InterPro)
Sed10g1774 403 CDD PTPc_plant_PTP1 179 380 - -
Sed10g1774 403 Gene3D Protein tyrosine phosphatase superfamily 95 393 IPR029021 -
Sed10g1774 403 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 97 390 IPR029021 -
Sed10g1774 403 ProSiteProfiles PTP type protein phosphatase domain profile. 118 386 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed10g1774 403 PRINTS Protein tyrosine phosphatase signature 196 216 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed10g1774 403 PRINTS Protein tyrosine phosphatase signature 353 368 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed10g1774 403 PRINTS Protein tyrosine phosphatase signature 178 185 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed10g1774 403 PRINTS Protein tyrosine phosphatase signature 320 338 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed10g1774 403 PRINTS Protein tyrosine phosphatase signature 282 299 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed10g1774 403 PRINTS Protein tyrosine phosphatase signature 369 379 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed10g1774 403 FunFam Tyrosine-protein phosphatase non-receptor type 12 95 393 - -
Sed10g1774 403 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 60 388 IPR050348 GO:0004725(PANTHER)
Sed10g1774 403 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 302 377 IPR000387 GO:0016311(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1774 - - - 0.0