Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1784 ATGTTGTTAAAGACGAGATTCAAGAATCTATCGATAAGCTGCAGTCCAGCTTTCACCAGTGGGAAAGGGCATCTTCCAATCAAGGAGAGAGAGTACAACTCACAAAAGAGTTGCTCGCTGCCTGCGAGAGCATTGAATGGCAGGAAGGTGGATGAATTGGACAAAGCTATTTCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATCATGCCGAAATTGAAAAACGAAAGAGATGGACGAGTACGGCTAGGACTCAGGTTGGAAATGTTAAGAAAGTAGTGGGAGCTGGAATGGAGCAAACTGGAGCTGCTAGTGCAAATGGGATGCGTAGAGAATTGATGAGACTACCTAATAATGCACACGAAACAGACAGATCAAACTCATATACAGCCCACCAAGCAAATGATGACTACATCACGTCCGAATCAGATAGACAACTTCTTCTCATAAAGCAGCAGGATGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACATGAAGAGCTCCTTGCACAGGATAAACTTATCGACGATCTAGGAACGGAAATGGACAGTACATCAAATCGTCTCGATTTTGTTCAGAAAAAAGTAGCTGTGGTCATGAAGAAGGCCAGCGCCAAGGGCCAGTTAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTCGTGCTGGTGTTCCTCACCTAG 723 44.67 MLLKTRFKNLSISCSPAFTSGKGHLPIKEREYNSQKSCSLPARALNGRKVDELDKAISVAARDPSWYGIDHAEIEKRKRWTSTARTQVGNVKKVVGAGMEQTGAASANGMRRELMRLPNNAHETDRSNSYTAHQANDDYITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKLIDDLGTEMDSTSNRLDFVQKKVAVVMKKASAKGQLMMILFLVALFIILFVLVFLT 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34904962 34909874 + Sed0014057.2 Sed10g1784 728288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1784 240 ProSitePatterns Syntaxin / epimorphin family signature. 154 193 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed10g1784 240 FunFam syntaxin-61 isoform X1 151 212 - -
Sed10g1784 240 PANTHER SYNTAXIN 49 226 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed10g1784 240 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 148 210 IPR000727 -
Sed10g1784 240 Pfam SNARE domain 185 236 IPR000727 -
Sed10g1784 240 SUPERFAMILY SNARE fusion complex 147 210 - -
Sed10g1784 240 CDD SNARE_Qc 151 208 - -
Sed10g1784 240 Gene3D - 155 219 - -
Sed10g1784 240 SMART tSNARE_6 143 210 IPR000727 -
Sed10g1784 240 Pfam Syntaxin 6, N-terminal 49 92 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Sed10g1784 240 SUPERFAMILY t-snare proteins 49 93 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed10g1784 240 Gene3D - 43 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1783 Sed-Chr10:34904962 Sed10g1784 Sed-Chr10:34904962 9.50E-97 tandem
Sed10g1784 Sed-Chr10:34904962 Sed10g1785 Sed-Chr10:34904962 7.10E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1784 K08500 - csv:101212527 293.893