Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1785 | ATGCCATCAGCACAAGATCCGTTCTATGTTGTTAAAGACGAGATTCAAGAATCTATCGATAAGCTGCAGTCCAGCTTTCACCAGTGGGAAAGGGCATCTTCCAATCAAGGAGAGAGAGTACAACTCACAAAAGAGTTGCTCGCTGCCTGCGAGAGCATTGAATGGCAGGTGGATGAATTGGACAAAGCTATTTCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATCATGCCGAAATTGAAAAACGAAAGAGATGGACGAGTACGGCTAGGACTCAGGTTGGAAATGTTAAGAAAGTAGTGGGAGCTGGAATGGAGCAAACTGGAGCTGCTAGTGCAAATGGGATGCGTAGAGAATTGATGAGACTACCTAATAATGCACACGAAACAGACAGATCAAACTCATATACAGCCCACCAAGCAAATGATGACTACATCACGTCCGAATCAGATAGACAACTTCTTCTCATAAAGCAGCAGGATGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACATGAAGAGCTCCTTGCACAGGATAAACTTATCGACGATCTAGGAACGGAAATGGACAGTACATCAAATCGTCTCGATTTTGTTCAGAAAAAAGTAGCTGTGGTCATGAAGAAGGCCAGCGCCAAGGGCCAGTTAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTCGTGCTGGTGTTCCTCACCTAG | 744 | 44.76 | MPSAQDPFYVVKDEIQESIDKLQSSFHQWERASSNQGERVQLTKELLAACESIEWQVDELDKAISVAARDPSWYGIDHAEIEKRKRWTSTARTQVGNVKKVVGAGMEQTGAASANGMRRELMRLPNNAHETDRSNSYTAHQANDDYITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKLIDDLGTEMDSTSNRLDFVQKKVAVVMKKASAKGQLMMILFLVALFIILFVLVFLT | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34904962 | 34909874 | + | Sed0014057.3 | Sed10g1785 | 728289 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1785 | 247 | Pfam | SNARE domain | 192 | 243 | IPR000727 | - | |
Sed10g1785 | 247 | SUPERFAMILY | SNARE fusion complex | 154 | 217 | - | - | |
Sed10g1785 | 247 | CDD | SNARE_NTD_AtSYP61-like | 5 | 102 | - | - | |
Sed10g1785 | 247 | Gene3D | - | 2 | 104 | - | - | |
Sed10g1785 | 247 | SUPERFAMILY | t-snare proteins | 5 | 100 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Sed10g1785 | 247 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 155 | 217 | IPR000727 | - | |
Sed10g1785 | 247 | Pfam | Syntaxin 6, N-terminal | 6 | 99 | IPR015260 | GO:0016020(InterPro)|GO:0048193(InterPro) | |
Sed10g1785 | 247 | CDD | SNARE_Qc | 158 | 215 | - | - | |
Sed10g1785 | 247 | FunFam | Syntaxin 10 | 3 | 105 | - | - | |
Sed10g1785 | 247 | Coils | Coil | 12 | 32 | - | - | |
Sed10g1785 | 247 | ProSitePatterns | Syntaxin / epimorphin family signature. | 161 | 200 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Sed10g1785 | 247 | SMART | tSNARE_6 | 150 | 217 | IPR000727 | - | |
Sed10g1785 | 247 | Gene3D | - | 162 | 226 | - | - | |
Sed10g1785 | 247 | FunFam | syntaxin-61 isoform X1 | 158 | 219 | - | - | |
Sed10g1785 | 247 | PANTHER | SYNTAXIN | 11 | 233 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g1783 | Sed-Chr10:34904962 | Sed10g1785 | Sed-Chr10:34904962 | 1.90E-129 | dispersed | |
Sed10g1784 | Sed-Chr10:34904962 | Sed10g1785 | Sed-Chr10:34904962 | 7.10E-97 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1785 | K08500 | - | csv:101212527 | 396.356 |