Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1785 ATGCCATCAGCACAAGATCCGTTCTATGTTGTTAAAGACGAGATTCAAGAATCTATCGATAAGCTGCAGTCCAGCTTTCACCAGTGGGAAAGGGCATCTTCCAATCAAGGAGAGAGAGTACAACTCACAAAAGAGTTGCTCGCTGCCTGCGAGAGCATTGAATGGCAGGTGGATGAATTGGACAAAGCTATTTCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATCATGCCGAAATTGAAAAACGAAAGAGATGGACGAGTACGGCTAGGACTCAGGTTGGAAATGTTAAGAAAGTAGTGGGAGCTGGAATGGAGCAAACTGGAGCTGCTAGTGCAAATGGGATGCGTAGAGAATTGATGAGACTACCTAATAATGCACACGAAACAGACAGATCAAACTCATATACAGCCCACCAAGCAAATGATGACTACATCACGTCCGAATCAGATAGACAACTTCTTCTCATAAAGCAGCAGGATGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACATGAAGAGCTCCTTGCACAGGATAAACTTATCGACGATCTAGGAACGGAAATGGACAGTACATCAAATCGTCTCGATTTTGTTCAGAAAAAAGTAGCTGTGGTCATGAAGAAGGCCAGCGCCAAGGGCCAGTTAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTCGTGCTGGTGTTCCTCACCTAG 744 44.76 MPSAQDPFYVVKDEIQESIDKLQSSFHQWERASSNQGERVQLTKELLAACESIEWQVDELDKAISVAARDPSWYGIDHAEIEKRKRWTSTARTQVGNVKKVVGAGMEQTGAASANGMRRELMRLPNNAHETDRSNSYTAHQANDDYITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKLIDDLGTEMDSTSNRLDFVQKKVAVVMKKASAKGQLMMILFLVALFIILFVLVFLT 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34904962 34909874 + Sed0014057.3 Sed10g1785 728289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1785 247 Pfam SNARE domain 192 243 IPR000727 -
Sed10g1785 247 SUPERFAMILY SNARE fusion complex 154 217 - -
Sed10g1785 247 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Sed10g1785 247 Gene3D - 2 104 - -
Sed10g1785 247 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed10g1785 247 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 155 217 IPR000727 -
Sed10g1785 247 Pfam Syntaxin 6, N-terminal 6 99 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Sed10g1785 247 CDD SNARE_Qc 158 215 - -
Sed10g1785 247 FunFam Syntaxin 10 3 105 - -
Sed10g1785 247 Coils Coil 12 32 - -
Sed10g1785 247 ProSitePatterns Syntaxin / epimorphin family signature. 161 200 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed10g1785 247 SMART tSNARE_6 150 217 IPR000727 -
Sed10g1785 247 Gene3D - 162 226 - -
Sed10g1785 247 FunFam syntaxin-61 isoform X1 158 219 - -
Sed10g1785 247 PANTHER SYNTAXIN 11 233 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1783 Sed-Chr10:34904962 Sed10g1785 Sed-Chr10:34904962 1.90E-129 dispersed
Sed10g1784 Sed-Chr10:34904962 Sed10g1785 Sed-Chr10:34904962 7.10E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1785 K08500 - csv:101212527 396.356