Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1804 ATGGACAACATCACCGCCCAGCTCAAGCGCGGAATCTCCCGCCAGTTCTCCACCGGCTCCCTTCGCCGGACCCTCAGCCGCCAGTTCACTCGCCAGTCCTCCCTCGACCCCCGCCGGAACAACCTGCGCTTCAGCTTCGGCCGCCAGTCCTCGCTCGACCCGATTCGCCGCTGCCCGGACGAGGACACCGACCTCTCTGTTCCGGAGAATTTGGACTCCACCATGCATCTTCTGTTCATGGCGTGCCGCGGCGACGTTCGAGGGGTGGAGGATTTGCTCAACGATGGGACGGATGTGAATAGTATCGATTTGGATGGGCGGACGGCTTTGCATATCGCGGCTTGTGAGGGCCATGCGGATGTTGTTAAGCTTTTGCTTACGCGTCGGGCGAATATCGATGCCAGGGATCGATGGGGCAGTACGGCTGCTGCTGATGCTAAGTATTATGGGAATACTGAGATTTACAACATTCTTAAGGCCCGTGGCGCTAAAGCTCCGAAATCTAGGAAGACGCCGATGACGGTTGCGAATCCGAGGGAAGTTCCAGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGGAGGAGTGATGGTATATCAAAGGGGACATACCAAGTTGCTAAATGGAATGGTACAAAAGTGGCTGTGAAAATTCTCGATAAAGATTGTTATTGTAACCCAGATTCTATTAATGCATTCAAGCATGAGTTGACATTATTGGAAAAGGTCCGACATCCCAATGTAGTTCAGTTTGTTGGTGCTGTGACCCAAAATTTGCCAATGATGATTGTTTCGGAATACCATCCAAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGACTATCCCCGTCTAAAGCCTTGAGATTCGCCCTCGATATTGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGATCCGGTTATCCACTGTGATTTAAAGCCAAAAAATATTTTTCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCTTGATAAGATTGTCAAAAATGTCTCCTGACAAAGCAAAATTAGCTCAACCAGTGGTTACTGACTTTTCGAATTTGTACTTAGCACCTGAGATTTACAACGATGAAATATTTGACAGAAGTGTCGATTCATTTTCGTTCGGTCTCGTTCTATACGAGATGGTTGAGGGTATTCAGCCATTCCATCCCAAGCTTCCAGAAGAGGTTTCCAGAGCTATTTGTATAGAAGGAAAGAGACCTCCATTTAAGATCAAGTCTAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTGGATAAAATAGTGGCCAACTGCTCAAAACAAGGATGGTGGAAAGACACATTTAAACTTCCCTGGTATGTTCTTTTCACTACGCTCTCCATTGCTACTTCCGGTATTCCTCCATTTCCTTTCTCTTACGATTTCTTTCCTCTCGACGACTTGAGCGCTTACGGTTATGATTTGTTGTTGCTTTTGAAGTTTATTGAATTGGAGCATACTTTGTTGTTAATGGCTTCCAACGCAATTTTAAGACGGAAGAGGTTTATTTCTCATTATGAGAACTATGTACGCACAATTCAAAGTTTACAGTGGACTGGGGATGTCGGTCAGAAGGCTAGCTCACTTGATTCTATTTCCAATAATGATGATCCCTCTGCTGTTTCTAATCATAGCTTAGGCAATAGAATCAGACCTCCTGCCAGGAAAGGTGAATTGCTTAATTTTACAGGAGTTCAGAAGTTTAGGCAAATATGCAATAGCATTCCAATATCAAATCATGGGAATTTCACTGTTTCTACTCCTGGTGGAATTGGATTGATGTCACGGTTCATCCGGAATGCTTCCACTTCTGCGGCCAAACAACCTGATTTTAGCAATGATGAAGAGGACAATGAATTGGTTGCTAAAAAGAGGAAGGAAGCATCTCCAGAGGAATGTGATCAAGCCGTGGAAGGTCTAAGCACTGCAAAAGCCAAAGCAAAGGCTAGACGATTACAAGAGTCTCAAAGCATAGTTACTGCCACTTTGCAAAGATTATGGACAATCGTCATGGGAATAGGTCCCGCTTTAAGGGTTGTTGCTTCAATGAGCAGGAAGGACTGGGCAAAGAAGCTTGTTCACTGGAAAGAAGAATTTGTATCAACTTTACAACATTACTGGTTGGGTTTCAAGCTTTTGTGGGCTGATGTGAGGATTAGTTCAAGATTACTTCAAAAACTTGCTGGTGGGAAGAATCTCTCAAGGCGAGAGCGACAACAGCTAACTCGGACTACAGCTGATATCTTTAGACTGGTTCCTTTTGCTGTTTTTATCATAGTTCCATTCATGGAATTTCTGCTGCCAGTTTTTCTTAAATTATTTCCCAACATGTTGCCATCAACTTTTCAAGACAAGATGAAAGAACAGGAAGCATTGAAAAGGAAACTTAATGCAAGAATAGAGTATGCTAAGTTCCTTCAAGACACGGCCAAGGAAATGGCTAAAGAAGTTCAAAACTCAAGAAGTGGAGAAATTAAGAAGACAGCTGAAGATCTTGATGAGTTTTTGACCAGGCTGAGGACTGGTGCTCGTGTATCGAATGAGGAAATTTTAGGATTTGCCAAGCTGTTCAATGATGAACTCACATTAGATAATATCAGCAGGCCTCGATTAGTAAATATGTGCAAGTACATGGGCATCAGCCCTTTTGGGACCGATGCATATTTACGATATATGCTCCGTAAAAGATTGCGGTGGATAAAAGAAGATGATAAATTGATCCAAGCAGAGGGGGTGGATTCCCTTTCTGAATCTGAGCTTCGTGAAGATTGTCGGGAGAGAGGCATGCTTGGGTTGCGCTCAGTAGAAGCAATGCGACAACAGCTTCGTGATTGGTTGGATCTGTCGCTTAACCATTCTGTTCCATCTTCACTTTTGATTCTTTCAAGAGCGTTCACAGTATCAGGAAAGTTGAAACCAGAGGAAGCTGTCCTGGCTACACTGTCTTCTCTGCCAGATGAGGTTGTAGACACTGTCGGTGTTACTTCTCTGCCATCTGAAGATTCGATATCAGAAAGGAGGAGAAAGTTAGAATTCCTTGAGATGCAAGAAGAAATGATCAAGGAGGAGGAGGAGAAAGAGGAAGAGGAACAAGCCAAAATGAAGGACTCCAAATCCAGTCAAGAAGATATAGCTCTGAAGGAGATGATCAACCCGATGGCAAGAGAAGCTATAGAAAAAGCTAGAGCAAAAGCTTCAGAAAAACAAGAGCACCTCTGTGAAGTCAGTCGTGCATTGGCTGTTTTAGCATCTGCCTCTTCTGTCAGTAGAGAGCGTGAAGAATTTCTGCAGCTTGTGAATAAGGAGATAGAGCTCTATAATAGCATGGTAGGAAGAGAAGGCACAGATGGGGAAAAGGAGGTCAGGGAGGCATATAGAGCTGCTCGGGAAGAAAGTGATCAATCTACTGAAGCTTCAGAAGGAGATGACATTTCATCAGCACTTGTTGAAAGAGTTGATACTATGCTTCAAAATCTAGAAAAGGAAATTGATGATGTGGATGCAAAAATTGGTGATCGTTGGCAATTACTAGACAGTTTTTTTTTTCCTCATAGGGATTTTGATGGCAAAGTAACTCCAGAAGAGGTTGCTGCTGCTGCTATATACTTAAAAGATACATTAGGAAAGGAAGGTATCCAAGAGCTTATTAGCAGTCTTTCCAAAGATAAAGATGGTAAAATTCTTGTAGAAGACATTGTGAGATTGGGCAGTCAGGCGGAAGACGACAACTCGTGA 3834 43.45 MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDEDTDLSVPENLDSTMHLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHADVVKLLLTRRANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKAPKSRKTPMTVANPREVPEYELNPLELQIRRSDGISKGTYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPVIHCDLKPKNIFLDNGGQLKVAGFGLIRLSKMSPDKAKLAQPVVTDFSNLYLAPEIYNDEIFDRSVDSFSFGLVLYEMVEGIQPFHPKLPEEVSRAICIEGKRPPFKIKSKSYPPDLKELIEECWDPEPVVRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWYVLFTTLSIATSGIPPFPFSYDFFPLDDLSAYGYDLLLLLKFIELEHTLLLMASNAILRRKRFISHYENYVRTIQSLQWTGDVGQKASSLDSISNNDDPSAVSNHSLGNRIRPPARKGELLNFTGVQKFRQICNSIPISNHGNFTVSTPGGIGLMSRFIRNASTSAAKQPDFSNDEEDNELVAKKRKEASPEECDQAVEGLSTAKAKAKARRLQESQSIVTATLQRLWTIVMGIGPALRVVASMSRKDWAKKLVHWKEEFVSTLQHYWLGFKLLWADVRISSRLLQKLAGGKNLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRKLNARIEYAKFLQDTAKEMAKEVQNSRSGEIKKTAEDLDEFLTRLRTGARVSNEEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRKRLRWIKEDDKLIQAEGVDSLSESELREDCRERGMLGLRSVEAMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLKPEEAVLATLSSLPDEVVDTVGVTSLPSEDSISERRRKLEFLEMQEEMIKEEEEKEEEEQAKMKDSKSSQEDIALKEMINPMAREAIEKARAKASEKQEHLCEVSRALAVLASASSVSREREEFLQLVNKEIELYNSMVGREGTDGEKEVREAYRAAREESDQSTEASEGDDISSALVERVDTMLQNLEKEIDDVDAKIGDRWQLLDSFFFPHRDFDGKVTPEEVAAAAIYLKDTLGKEGIQELISSLSKDKDGKILVEDIVRLGSQAEDDNS 1277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35069399 35090425 - Sed0005353.1 Sed10g1804 728308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1804 1277 MobiDBLite consensus disorder prediction 1059 1074 - -
Sed10g1804 1277 SUPERFAMILY Ankyrin repeat 72 175 IPR036770 -
Sed10g1804 1277 SUPERFAMILY Protein kinase-like (PK-like) 203 451 IPR011009 -
Sed10g1804 1277 FunFam serine/threonine-protein kinase STY46-like 186 269 - -
Sed10g1804 1277 Gene3D Transferase(Phosphotransferase) domain 1 269 468 - -
Sed10g1804 1277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1804 1277 FunFam Integrin-linked protein kinase 1 47 184 - -
Sed10g1804 1277 ProSiteProfiles Letm1 ribosome-binding (RBD) domain profile. 827 1030 IPR033122 GO:0043022(InterPro)
Sed10g1804 1277 CDD STKc_MAP3K-like 199 451 - -
Sed10g1804 1277 Coils Coil 1036 1073 - -
Sed10g1804 1277 MobiDBLite consensus disorder prediction 1054 1074 - -
Sed10g1804 1277 Gene3D - 53 184 IPR036770 -
Sed10g1804 1277 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Sed10g1804 1277 Coils Coil 1182 1202 - -
Sed10g1804 1277 Pfam LETM1-like, RBD 766 999 IPR033122 GO:0043022(InterPro)
Sed10g1804 1277 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Sed10g1804 1277 SMART ANK_2a 70 101 IPR002110 GO:0005515(InterPro)
Sed10g1804 1277 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Sed10g1804 1277 SMART serkin_6 193 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1804 1277 FunFam Integrin-linked protein kinase family 269 467 - -
Sed10g1804 1277 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1804 1277 SUPERFAMILY EF-hand 1127 1267 IPR011992 -
Sed10g1804 1277 Pfam Ankyrin repeats (3 copies) 78 164 IPR002110 GO:0005515(InterPro)
Sed10g1804 1277 PANTHER LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN 632 1157 IPR044202 GO:0005743(InterPro)|GO:0006875(PANTHER)
Sed10g1804 1277 MobiDBLite consensus disorder prediction 1158 1179 - -
Sed10g1804 1277 Pfam Protein tyrosine and serine/threonine kinase 199 450 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1804 1277 Gene3D Phosphorylase Kinase; domain 1 187 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0316 Sed-Chr6:2840414 Sed10g1804 Sed-Chr10:35069399 3.40E-73 dispersed
Sed06g0317 Sed-Chr6:2845128 Sed10g1804 Sed-Chr10:35069399 6.90E-45 dispersed
Sed08g2714 Sed-Chr8:39061769 Sed10g1804 Sed-Chr10:35069399 4.00E-85 dispersed
Sed10g1804 Sed-Chr10:35069399 Sed11g0623 Sed-Chr11:7582839 2.70E-264 dispersed
Sed10g1804 Sed-Chr10:35069399 Sed01g0721 Sed-Chr1:5294382 8.70E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79866 PF07766 LETM1 4.00E-106 No_clan Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1804 K17800 - vvi:100257815 1018.84