Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1805 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAACCGCAGCAGCCCGGTGTCGGTGCCGGGCAATTACCTTATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCGGGAACTCCTTCTATTACGATCCCCTCGACTCAGCAATCATCCAATTTCTCTAATTCTCCTCACCAGCTTGCCTTTCAGCAGGCTCAACATTTCCACCACCAGCAACAACAGCAGCAGCAACAACAGCTGCAAATGTTTTGGGCAAACCAAATTCAAGAGATTGAACAAACATCTGACTTCAAGAACCACAGTCTCCCCCTTGCCCGAATCAAGAAAATAATGAAAGCGGATGAAGATGTCCGAATGATTTCAGCTGAAGCGCCCGTTATATTCGCAAAGGCGTGCGAAATGTTTGTCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATCGCAGCTGCAATATCAAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGACTTGGAATCACGAAAGCTTCTATTCCCGTTGTTGGTTCGCCGTCTGATATTCCTTATTACTACGTTCCATCTCAGCATCCGGTGGGTGCTTCGGGGATGATCTTGGGAAAGCAATTAGATCAAGCGAACATGTACGGTGCCACGACTCAACATCCCCGACCACCGACGATGCCTTTCATGCCATGGCCACATGCACAATCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGGATAG 798 46.87 MDQSERSQHQQQPQQPGVGAGQLPYSNPYQTAPMVASGTPSITIPSTQQSSNFSNSPHQLAFQQAQHFHHQQQQQQQQQLQMFWANQIQEIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFVLELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPSDIPYYYVPSQHPVGASGMILGKQLDQANMYGATTQHPRPPTMPFMPWPHAQSQQQQQTQQQSDG 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35109340 35112414 + Sed0010559.1 Sed10g1805 728309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1805 265 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 81 217 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed10g1805 265 Pfam Core histone H2A/H2B/H3/H4 55 164 IPR007125 GO:0003677(InterPro)
Sed10g1805 265 SUPERFAMILY Histone-fold 61 173 IPR009072 GO:0046982(InterPro)
Sed10g1805 265 MobiDBLite consensus disorder prediction 1 55 - -
Sed10g1805 265 MobiDBLite consensus disorder prediction 233 265 - -
Sed10g1805 265 FunFam Nuclear transcription factor Y subunit gamma 67 179 - -
Sed10g1805 265 MobiDBLite consensus disorder prediction 248 265 - -
Sed10g1805 265 Gene3D Histone, subunit A 62 179 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3956 Sed-Chr4:47555262 Sed10g1805 Sed-Chr10:35109340 1.40E-58 dispersed
Sed04g3957 Sed-Chr4:47555262 Sed10g1805 Sed-Chr10:35109340 1.40E-58 dispersed
Sed06g0326 Sed-Chr6:2868793 Sed10g1805 Sed-Chr10:35109340 1.30E-103 dispersed
Sed06g0327 Sed-Chr6:2868793 Sed10g1805 Sed-Chr10:35109340 1.30E-103 dispersed
Sed07g1598 Sed-Chr7:13031819 Sed10g1805 Sed-Chr10:35109340 1.30E-22 dispersed
Sed08g0028 Sed-Chr8:107730 Sed10g1805 Sed-Chr10:35109340 4.60E-51 dispersed
Sed10g1805 Sed-Chr10:35109340 Sed12g2510 Sed-Chr12:34582456 5.90E-52 dispersed
Sed10g1805 Sed-Chr10:35109340 Sed04g0482 Sed-Chr4:3547806 6.20E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39838 PF00125 Histone 1.10E-17 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1805 K08066 - csv:101213813 394.43