Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1805 | ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAACCGCAGCAGCCCGGTGTCGGTGCCGGGCAATTACCTTATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCGGGAACTCCTTCTATTACGATCCCCTCGACTCAGCAATCATCCAATTTCTCTAATTCTCCTCACCAGCTTGCCTTTCAGCAGGCTCAACATTTCCACCACCAGCAACAACAGCAGCAGCAACAACAGCTGCAAATGTTTTGGGCAAACCAAATTCAAGAGATTGAACAAACATCTGACTTCAAGAACCACAGTCTCCCCCTTGCCCGAATCAAGAAAATAATGAAAGCGGATGAAGATGTCCGAATGATTTCAGCTGAAGCGCCCGTTATATTCGCAAAGGCGTGCGAAATGTTTGTCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATCGCAGCTGCAATATCAAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGACTTGGAATCACGAAAGCTTCTATTCCCGTTGTTGGTTCGCCGTCTGATATTCCTTATTACTACGTTCCATCTCAGCATCCGGTGGGTGCTTCGGGGATGATCTTGGGAAAGCAATTAGATCAAGCGAACATGTACGGTGCCACGACTCAACATCCCCGACCACCGACGATGCCTTTCATGCCATGGCCACATGCACAATCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGGATAG | 798 | 46.87 | MDQSERSQHQQQPQQPGVGAGQLPYSNPYQTAPMVASGTPSITIPSTQQSSNFSNSPHQLAFQQAQHFHHQQQQQQQQQLQMFWANQIQEIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFVLELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPSDIPYYYVPSQHPVGASGMILGKQLDQANMYGATTQHPRPPTMPFMPWPHAQSQQQQQTQQQSDG | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35109340 | 35112414 | + | Sed0010559.1 | Sed10g1805 | 728309 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1805 | 265 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 81 | 217 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Sed10g1805 | 265 | Pfam | Core histone H2A/H2B/H3/H4 | 55 | 164 | IPR007125 | GO:0003677(InterPro) | |
Sed10g1805 | 265 | SUPERFAMILY | Histone-fold | 61 | 173 | IPR009072 | GO:0046982(InterPro) | |
Sed10g1805 | 265 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Sed10g1805 | 265 | MobiDBLite | consensus disorder prediction | 233 | 265 | - | - | |
Sed10g1805 | 265 | FunFam | Nuclear transcription factor Y subunit gamma | 67 | 179 | - | - | |
Sed10g1805 | 265 | MobiDBLite | consensus disorder prediction | 248 | 265 | - | - | |
Sed10g1805 | 265 | Gene3D | Histone, subunit A | 62 | 179 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3956 | Sed-Chr4:47555262 | Sed10g1805 | Sed-Chr10:35109340 | 1.40E-58 | dispersed | |
Sed04g3957 | Sed-Chr4:47555262 | Sed10g1805 | Sed-Chr10:35109340 | 1.40E-58 | dispersed | |
Sed06g0326 | Sed-Chr6:2868793 | Sed10g1805 | Sed-Chr10:35109340 | 1.30E-103 | dispersed | |
Sed06g0327 | Sed-Chr6:2868793 | Sed10g1805 | Sed-Chr10:35109340 | 1.30E-103 | dispersed | |
Sed07g1598 | Sed-Chr7:13031819 | Sed10g1805 | Sed-Chr10:35109340 | 1.30E-22 | dispersed | |
Sed08g0028 | Sed-Chr8:107730 | Sed10g1805 | Sed-Chr10:35109340 | 4.60E-51 | dispersed | |
Sed10g1805 | Sed-Chr10:35109340 | Sed12g2510 | Sed-Chr12:34582456 | 5.90E-52 | dispersed | |
Sed10g1805 | Sed-Chr10:35109340 | Sed04g0482 | Sed-Chr4:3547806 | 6.20E-62 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39838 | PF00125 | Histone | 1.10E-17 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1805 | K08066 | - | csv:101213813 | 394.43 |