Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1807 ATGGCACCCTCATTTGAGTTGCAACAAAAAGATAACTTATGCATCATTCAACAAGATCCCCTCAACTGGGGATTGGCGGCCGAGTCCCTCAAGGGAAGCCACCTCGACGAGGTGAAGCGTATGGTCGAAGAGTATCGAAGGCCTCTCGTGAAGCTTGGAGGGCAGACTCTCACTATTTCTCAAGTGGCTGCCATCGCCACTCGTGATAACGATGTGATGGTTGAATTGGCTGAGTCTGCTAGAGCTGGGGTCAAAGCTAGTAGTGATTGGGTGATGGAAAGTATGAGCAAAGGTACTGATAGTTATGGTGTCACGACTGGATTTGGTGCCACCTCTCATAGAAGAACCAATCAGGGTGGAGCTCTTCAAAAGGAGTTGATTCGATTTTTGAATGCTGGCATTTTTGGAAATGGGGAGGAGTCCAACCACACTTTGCCTCACTCTGCCACTCGAGCAGCCATGTTAGTTAGAATCAACACTCTTCTTCAAGGCTATTCTGGAATTAGATTCGAGATTTTGGAAGCCATCACAAGTCTTCTCAACCACAATGTCACTCCATGTTTGCCACTAAGAGGAACGATCACGGCATCTGGGGATTTGGTCCCTTTGTCGTATATTGCTGGCCTATTAACAGGTCGTCACAACTCCAAAGCCATCGGACCCAATGGTGAAATCCTTGATGCGAAGAGTGCTTTTGAACAAGCTTGTATTCCATCTAATTTCTTTGAGTTGCAGCCTAAGGAAGGGTTGGCCCTCGTCAATGGAACTGCGGTTGGTTCTGGGCTCGCATCCATTGTTCTATTTGAGGCTAACATTATGGCTGTCCTATCAGAAATACTATCAGCTATTTTTGCTGAAGTTATGCAAGGAAAGCCAGAGTTTACCGATTATTTGACCCACAAGTTGAAGCACCACTCTGGTCAAATTGAAGCCGCTGCAATCATGGAACACATATTGGATGGAAGCTCTTACATGAAAACGGCTAAGAAGTTACATGAGATTGATCCCCTTCAAAAGCCTAAACAAGATCGTTATGCTCTTAGAACCTCACCTCAATGGCTTGGTCCATTGATTGAAGTGATTCGATTCTCCACCAAGTCTATTGAGCGAGAGATTAACTCGGTTAATGACAACCCTTTGATTGATGTTTCGAGAAATAAAGCGATACATGGAGGAAACTTCCAAGGAACACCGATTGGAGTTTCTATGGACAACACCCGATTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTTGTTAATGATTTTTACAATAATGGATTGCCTTCTAATCTTTCTGCTAGTAGAAACCCGAGCTTGGATTATGGGTTTAAAGGCGCTGAAATTGCCATGGCTTCATATTGCTCTGAGCTTCAATATCTTGCAAACCCAGTAACAAGTCATGTGCAAAGTGCAGAGCAACACAACCAAGATGTTAATTCCCTTGGTTTAATCTCCTCAAGAAAAACAGCAGAAGCCATTGACATTTTGAAACTCATGTCTTCTTCATTTTTGGTTGCACTCTGCCAAGCAATTGATTTGAGGCATTTGGAGGAAAACTTGAAGAGCACCGTTAAAAATACCGTAAGTCAAGTAGCCAAAAAAGTGTTGACCACATCCTCTGACGGAGCACTTCACCCATCAAGATTTTGCGAGAAAGATCTACTTAAAGTGGTTGATAGAGAATACACATTTGCTTACATCGATGATCCATGCAGTGCTACTTACCCCTTGATGCAGAAATTGAGACAAGTTCTTGTCGAACATGCACTCACCAATGGCGAGAAAGAAAAAAGCCCAAACACTTCCATCTTTCAAAAGATTAGTGCTTTTGAAGAGGAGCTAAAGGTTGTTCTACCAAAGGAAGTTGAAAATGCAAGGTTGGCATATGAGAGCGGAAATTCTAAGATTGAAAATCAAATTAAAAATTGCAGATCTTATCCGTTATACAAGTTTGTGAGAGAAGAGTTGGGAACAAAATTACTAACCGGAGAAAAAGTGGTATCTCCCGGAGAAGAATGTGAAAAAGTATTCACATCTTTGTGCAAAGGAAAGATGATTGACTCTATCCTAGAGTGCTTGAAAGAATGGAATGGTGCCCCTATTCCTATTTGTTAA 2133 42.43 MAPSFELQQKDNLCIIQQDPLNWGLAAESLKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGNGEESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITSLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEILDAKSAFEQACIPSNFFELQPKEGLALVNGTAVGSGLASIVLFEANIMAVLSEILSAIFAEVMQGKPEFTDYLTHKLKHHSGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSSFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSDGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGEKEKSPNTSIFQKISAFEEELKVVLPKEVENARLAYESGNSKIENQIKNCRSYPLYKFVREELGTKLLTGEKVVSPGEECEKVFTSLCKGKMIDSILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35128698 35131095 + Sed0027608.1 Sed10g1807 728311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1807 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Sed10g1807 710 PANTHER HISTIDINE AMMONIA-LYASE 16 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed10g1807 710 FunFam Phenylalanine ammonia-lyase 10 256 - -
Sed10g1807 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed10g1807 710 Pfam Aromatic amino acid lyase 57 535 IPR001106 -
Sed10g1807 710 Gene3D - 523 644 IPR023144 -
Sed10g1807 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Sed10g1807 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Sed10g1807 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
Sed10g1807 710 CDD PAL-HAL 55 520 IPR001106 -
Sed10g1807 710 Gene3D - 10 256 IPR024083 -
Sed10g1807 710 FunFam Phenylalanine ammonia-lyase 257 558 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1807 Sed-Chr10:35128698 Sed12g0525 Sed-Chr12:3180763 0.00E+00 dispersed
Sed10g1807 Sed-Chr10:35128698 Sed14g0397 Sed-Chr14:4102041 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1807 K10775 - csv:101204574 1289.25