Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1808 ATGGCAGATGGTGAAGATATCCAACCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCAGGTGATGATGCTCCAAGGGCCGTGTTTCCTAGTATCGTCGGTAGACCACGTCATACTGGTGTGATGGTCGGAATGGGCCAGAAGGATGCCTATGTTGGAGATGAAGCTCAGTCAAAAAGGGGTATTCTAACATTGAAATATCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCGGTACTTCTTACCGAAGCACCGCTCAATCCAAAGGCAAACAGGGAAAAGATGACTCAGATCATGTTCGAAACCTTCGACGTCCCTGCTATGTATGTTGCAATCCAGGCCGTTTTGTCTCTCTACGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGACGGAGTGAGCCACACGGTGCCAATATACGAGGGATTTTCGCTTCCACATGCAATCTTACGTCTCGACCTTGCTGGTCGTGATCTAACTGATGCTTTGATGAAAATTCTTACCGAAAGAGGTTACATGTTCACGACCACAGCCGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAAGTCTAGTTCAGCCATTGAGAAAAGCTACGAACTACCAGACGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTACTTTTCCAGCCATCTTTGATCGGCATGGAATCTTCCGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTCGATATCAGGAAGGACTTATACGGTAACATCGTCCTCAGTGGTGGTACAACGATGTTCCCCGGCATTGCCGATCGGATGAGCAAAGAAATTACAGCTCTTGCTCCCAGCAGCATGAAGATTAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGGTCCATCCTAGCATCTCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCGGCTATTGTTCACAGGAAATGCTTCTGA 1134 47.53 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETAKSSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESSGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35137400 35140823 + Sed0010223.1 Sed10g1808 728312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1808 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sed10g1808 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Sed10g1808 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sed10g1808 377 SMART actin_3 7 377 IPR004000 -
Sed10g1808 377 PANTHER ACTIN 8 369 IPR004000 -
Sed10g1808 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Sed10g1808 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sed10g1808 377 FunFam Major actin 261 340 - -
Sed10g1808 377 Pfam Actin 5 377 IPR004000 -
Sed10g1808 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Sed10g1808 377 FunFam Actin, muscle 182 273 - -
Sed10g1808 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Sed10g1808 377 Gene3D - 140 340 - -
Sed10g1808 377 Gene3D - 10 371 - -
Sed10g1808 377 PRINTS Actin signature 51 62 IPR004000 -
Sed10g1808 377 PRINTS Actin signature 238 254 IPR004000 -
Sed10g1808 377 PRINTS Actin signature 63 85 IPR004000 -
Sed10g1808 377 PRINTS Actin signature 142 161 IPR004000 -
Sed10g1808 377 PRINTS Actin signature 117 130 IPR004000 -
Sed10g1808 377 PRINTS Actin signature 28 37 IPR004000 -
Sed10g1808 377 FunFam Actin, alpha skeletal muscle 3 176 - -
Sed10g1808 377 FunFam Putative actin-related protein 5 341 369 - -
Sed10g1808 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0331 Sed-Chr6:2896445 Sed10g1808 Sed-Chr10:35137400 2.00E-218 dispersed
Sed07g0645 Sed-Chr7:4842653 Sed10g1808 Sed-Chr10:35137400 1.70E-54 dispersed
Sed08g0343 Sed-Chr8:2080033 Sed10g1808 Sed-Chr10:35137400 2.40E-74 dispersed
Sed10g1808 Sed-Chr10:35137400 Sed12g1245 Sed-Chr12:8902651 4.80E-209 dispersed
Sed10g1808 Sed-Chr10:35137400 Sed10g0485 Sed-Chr10:3084451 2.50E-213 transposed
Sed10g1808 Sed-Chr10:35137400 Sed05g3846 Sed-Chr5:46087412 2.50E-213 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1808 K10355 - csv:101214459 754.977