Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1818 ATGGCCAAGCTGAGGATGATCATCATTGTCAATTTCTTGCTGTTCCTCAGTTGCTTTACAGCCATTTCTGAAGGGCAGCTGAAATTCGGATTCTACGCTCGAACTTGTCCCGCTGCCGAGTCCGTCGTTCGGTCCGTTGTGAGCGAGGCCGTTCGGAGCAATGCCAACATGGCTGCCGTGTTGCTTCGCCTTCATTTTCACGACTGCATCGTCGAGGGTTGCGACGGTTCGATCTTGATCGATAACGCCCCAAACCCTGAAAAGCGTGCCTTCGGGCACCAAGGAGTTGGGGGCTTCGAGGTAATAGAGAGAGCAAAGGAAGCATTGGAAACTCGATGTCCAGGCGTTGTTTCTTGTGCTGATATTGTGGCCTTGGCTGCTAGAGACGCCATTATTATGGCAAACGGACCGGGGTACGAGGTACCGACCGGTCGGAGAGATGGTAGGGTATCTGATGTATCTCTAGCAAATGAGCTGCCAGATGTGAGTGATTCAATTGAGGTTTTGAAGAACAAATTTGGACAAAAAGGGTTGACAGACAGAGACTTGGTTTTACTAAGTGCGGCACACACAATCGGAACAACAGCATGCTTCTTCATGACAAAACGCCTCTACGACTTCTTCCCGGGCGGCGGATCGGACCCCGAGATAAGCCCGGTATTGCTGCCGGAGCTAAACTCGCAATGCCCTCGAAATGGTGATGTGAATATCCGCCTCAACATCGACCGTAACAGCCCTCAAACCTTCGACATTAGCATTCTCCAAAACATCAGAAATGGCTTAGCCGTGCTCGCCTCCGACGCTCGCTTAAATGACGATGCATCGACCCGAGGTATCATCGACTCGTACATCAGCCCGCTAGCCCCCATTTTCGGACCCTCATTTCTGGATGATTTTGTCAACTCCATGGTTAAAATGGGGCAAATTGGGATTAAAACTGGCTCTCAAGGAGAAATTCGAAGGGTTTGTTCTACTTTTAACTCAAGGTAA 990 50.1 MAKLRMIIIVNFLLFLSCFTAISEGQLKFGFYARTCPAAESVVRSVVSEAVRSNANMAAVLLRLHFHDCIVEGCDGSILIDNAPNPEKRAFGHQGVGGFEVIERAKEALETRCPGVVSCADIVALAARDAIIMANGPGYEVPTGRRDGRVSDVSLANELPDVSDSIEVLKNKFGQKGLTDRDLVLLSAAHTIGTTACFFMTKRLYDFFPGGGSDPEISPVLLPELNSQCPRNGDVNIRLNIDRNSPQTFDISILQNIRNGLAVLASDARLNDDASTRGIIDSYISPLAPIFGPSFLDDFVNSMVKMGQIGIKTGSQGEIRRVCSTFNSR 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35254808 35260067 + Sed0017407.1 Sed10g1818 728322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1818 329 SUPERFAMILY Heme-dependent peroxidases 26 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Sed10g1818 329 CDD secretory_peroxidase 26 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed10g1818 329 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PANTHER PEROXIDASE 25-RELATED 19 323 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed10g1818 329 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Sed10g1818 329 FunFam Peroxidase 30 179 - -
Sed10g1818 329 Pfam Peroxidase 43 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Sed10g1818 329 ProSiteProfiles Plant heme peroxidase family profile. 26 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1818 329 Gene3D Peroxidase, domain 2 160 306 - -
Sed10g1818 329 Gene3D - 30 327 - -
Sed10g1818 329 FunFam Peroxidase 160 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1818 Sed-Chr10:35254808 Sed10g1834 Sed-Chr10:35367093 1.60E-78 dispersed
Sed12g2380 Sed-Chr12:33687557 Sed10g1818 Sed-Chr10:35254808 5.50E-76 transposed
Sed10g1818 Sed-Chr10:35254808 Sed06g0935 Sed-Chr6:12054846 5.80E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1818 K00430 - csv:101221831 491.886