Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1833 ATGGCTGCAACTTCTGGCGCTCTGCTTAATGGATTAGGCTCAACTTTCCTCTGTGGAGGTAGCAGAAGCCAAACCTTGCTGGCCAGAGCCAGAGGCAGTGTCAATGTCGTAAGCGGCTCTCGTAAACTTGTCATTGTCGCTGCTGCTGCTGCCAAGAAGTCTTGGCTCCCTGGCGTTAGGGGCGGCGGCAACCTCATCAACCCCGAATGGCTCGATGGCTCCCTTCCAGGCGACTACGGCTTCGACCCACTGGGATTAGGGAAGGACCCAGCATTTCTAAAATGGTACAGAGAAGCAGAGCTAATCCACGGCCGGTGGGCAATGGCAGCCGTGCTGGGAATCTTCATCGGCCAGGCCTGGAGTGGGATCCCATGGTTCGCAGCCGGAGCCGAGCCATCCGCAATCGCTCCATTCTCCTTCGGATCACTGCTCGGAACCCAGCTTCTGCTAATGGGGTGGGTCGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCCCAATCCGTGGAATGGGCAACGCCATGGTCGAGAACGGCGGAGAACTTCGCGAATGCAACCGGAGAACAGGGGTACCCCGGTGGGAAATTCTTCGATCCGTTGGGATTTGCCGGAAGTTTGAAGGATGGAGAGTACATACCGGACACGGAGAAGTTGGAGAGATTGAAGCTGGCTGAGATTAAGCATTCTAGAATCGCCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAAACGCCGTTGGGTGCTCTTGGATTGTAA 771 55.25 MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVRGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAWSGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFYFEAGQGKTPLGALGL 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35353813 35356183 + Sed0005610.1 Sed10g1833 728337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1833 256 Gene3D Chlorophyll a/b binding protein domain 68 255 - -
Sed10g1833 256 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 48 254 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Sed10g1833 256 FunFam Chlorophyll a-b binding protein, chloroplastic 68 255 - -
Sed10g1833 256 SUPERFAMILY Chlorophyll a-b binding protein 66 256 - -
Sed10g1833 256 Pfam Chlorophyll A-B binding protein 68 244 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1833 Sed-Chr10:35353813 Sed12g1695 Sed-Chr12:28189246 1.10E-34 dispersed
Sed10g1832 Sed-Chr10:35350636 Sed10g1833 Sed-Chr10:35353813 6.50E-141 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1833 K08917 - csv:101204705 471.855