Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1834 ATGGCGAAACTTAGTTATAGTCCAATGCTCTTTCTTGCTATGTCTGTGGCTGCATTGCTTGGCTTTGCTGCCACGGTTGTGCACGGCCAAGGCACACGCATCGGCTTCTACTCCAGCGCTTGCCCTCGAGCTGAGTCCATTGTTAGATCTACCATCCAATCTCATTTTCGTTCCGATCCCACGATTGCTCCTGGCTTGTTGAGAATGCACTTCCATGATTGCTTTGTTCGGGGTTGTGATGCATCCGTGCTCCTTGCTGGCTCAAATACTGAGAGGAATTCACCTCCCAACCTTTCGTTGAAAGGGTTCGAGGTCATCGACGATGCCAAGTCGCAGCTCGAAGCTGCTTGTCCTGGTGTTGTTTCTTGTGCTGATATTCTTACTCTTGCTGCTCGTGACTCCGTAGTTTTGACGAGCGGAGTAGGCTGGAGTGTGCCGACCGGACGAAGAGACGGGACAGTTTCAGTGTCTTCAGAAGCTGATAACTTACCTGGATTTACAGACTCCATTGATGTTCAAAAACAAAAATTCAGTGACAAGGGACTCAACACTCAAGATCTTGTCACTCTACTTGGTGGGCACACAATCGGCACAACACAATGCCAATTCTTCAGCTACAGGCTCTTCAACTTCACCGCAAACGGCGCGGACCCAAGCATCGACCCGGCATTCGTGAGCCAACTACAAGCACTCTGCCCACAAAACGGGGACGGCACACGCCGGGTCGGGTTGGACACGGGCAGCCCAAGCAGGTTCGACACGTCGTTCTTCTCAAACTTGAGGAACGGTCGAGGCATCTTGGAGTCGGATCAAAAGCTCTGGACCGATGCCTCGACTCGCACTTTCGTCCAACGATTCTTGGGCCTCCGAGGGCTCTTGGGATTGACCTTCAACGCCGAGTTCGGAAGGTCTATGGTTAAGATGAGCAACATTGAAGTTAAAACTGGAACTCAGGGTGAAATTCGTAAGGTTTGCTCTGCAGTTAACTAA 990 51.01 MAKLSYSPMLFLAMSVAALLGFAATVVHGQGTRIGFYSSACPRAESIVRSTIQSHFRSDPTIAPGLLRMHFHDCFVRGCDASVLLAGSNTERNSPPNLSLKGFEVIDDAKSQLEAACPGVVSCADILTLAARDSVVLTSGVGWSVPTGRRDGTVSVSSEADNLPGFTDSIDVQKQKFSDKGLNTQDLVTLLGGHTIGTTQCQFFSYRLFNFTANGADPSIDPAFVSQLQALCPQNGDGTRRVGLDTGSPSRFDTSFFSNLRNGRGILESDQKLWTDASTRTFVQRFLGLRGLLGLTFNAEFGRSMVKMSNIEVKTGTQGEIRKVCSAVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35367093 35369253 + Sed0016664.1 Sed10g1834 728338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1834 329 CDD secretory_peroxidase 33 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed10g1834 329 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Sed10g1834 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Sed10g1834 329 Gene3D Peroxidase, domain 2 164 308 - -
Sed10g1834 329 SUPERFAMILY Heme-dependent peroxidases 33 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 ProSiteProfiles Plant heme peroxidase family profile. 31 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 FunFam Peroxidase 164 308 - -
Sed10g1834 329 Pfam Peroxidase 48 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1834 329 Gene3D - 36 329 - -
Sed10g1834 329 FunFam Peroxidase 35 177 - -
Sed10g1834 329 PANTHER PEROXIDASE 25-RELATED 22 325 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1844 Sed-Chr5:31901581 Sed10g1834 Sed-Chr10:35367093 4.50E-58 dispersed
Sed06g0935 Sed-Chr6:12054846 Sed10g1834 Sed-Chr10:35367093 2.10E-23 dispersed
Sed09g1328 Sed-Chr9:37419271 Sed10g1834 Sed-Chr10:35367093 3.40E-65 dispersed
Sed10g1818 Sed-Chr10:35254808 Sed10g1834 Sed-Chr10:35367093 1.60E-78 dispersed
Sed10g1834 Sed-Chr10:35367093 Sed12g2380 Sed-Chr12:33687557 7.40E-105 dispersed
Sed11g1210 Sed-Chr11:27905440 Sed10g1834 Sed-Chr10:35367093 4.50E-59 dispersed
Sed10g1834 Sed-Chr10:35367093 Sed10g1835 Sed-Chr10:35372213 1.50E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1834 K00430 - csv:101217567 530.02