Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1835 ATGGTGAAAGTTTGTTTCATTTTGGTTCTATTTGCGGTAGTGGTGTTTGGGTTGGCCATCACCACCGTTGTGCATGGTCAGGGCACGCGCCTAGGGTTTTACCTCCCCACGTGCCCTGAAGCCGAATCCATCGTTAGATCCACCGTTCAATCTCATTTTCAAATGGACCCTTCGATTGCTCCTGGCTTATTGAGAATGCATGCCCATGATTGCTTTGTTCGAGGATGCGATGCTTCGGTTCTTATTGCTGGCCCCAACACTGAGAGGACGGCTGTGCCAAACCTTACTTTGAGAGGGTTTGAGGTGATTGACGATGCTAAGGAAAAACTCGAAGATGCCTGCCCTGGCGTCGTATCTTGTGCTGATATTCTTGCTCTTGCTGCTCGTGACTCCGTGGTTATGACAGGCGGATTAAGTTGGGAAGTGCCGATGGGACGTAGAGATGGGAGAGTTTCATTAATTTCAGAGGTACATTTGCCAAGCTTTTCAGATTCAATTCAACTTCAGAAAAACAAGTTCATGGCTGTAGGTCTCAACACCCATGATTTGGTGACTCTAGCAGGCGCCCATACCATCGGTACAGCATCATGTCGTTTCTTCAGTTACAGGCTCTACAACTTCACCACAACTACCGAAACGGGCGCGGATCCGGCCATCAACCCGACGCTCGTTGGTCGACTACGAGCTCTTTGTCCCAAAGATGGAGATGGCACCACGAGGGTTGAGCTCGACGTGGATAGTCCCGAAAAGTTCGACTTGTCGTTCTACTCGAACTTGAGGCAAGGGGGTGGGATCTTGGAGTCTGATCAGCTGCTGTGGAATGATGACTCTACTCGGCCTATTGTTCGACAGTACTTGGGCTCGGGAATGCGACGTTCGAGCTTTCGAGTTGAGTTTGGGAGATCCATGGTTAAGATGAGCAACATCAAAGTGAAAACTGGCAAGGAGGGAGAAATCCGTAGGGTTTGTTCTGAAGTTAATTAA 984 49.19 MVKVCFILVLFAVVVFGLAITTVVHGQGTRLGFYLPTCPEAESIVRSTVQSHFQMDPSIAPGLLRMHAHDCFVRGCDASVLIAGPNTERTAVPNLTLRGFEVIDDAKEKLEDACPGVVSCADILALAARDSVVMTGGLSWEVPMGRRDGRVSLISEVHLPSFSDSIQLQKNKFMAVGLNTHDLVTLAGAHTIGTASCRFFSYRLYNFTTTTETGADPAINPTLVGRLRALCPKDGDGTTRVELDVDSPEKFDLSFYSNLRQGGGILESDQLLWNDDSTRPIVRQYLGSGMRRSSFRVEFGRSMVKMSNIKVKTGKEGEIRRVCSEVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35372213 35375205 - Sed0013383.1 Sed10g1835 728339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1835 327 PANTHER PEROXIDASE 25-RELATED 16 323 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed10g1835 327 Gene3D - 32 327 - -
Sed10g1835 327 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 FunFam Peroxidase 160 306 - -
Sed10g1835 327 ProSiteProfiles Plant heme peroxidase family profile. 28 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 Pfam Peroxidase 45 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 CDD secretory_peroxidase 30 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed10g1835 327 SUPERFAMILY Heme-dependent peroxidases 30 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Sed10g1835 327 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g1835 327 Gene3D Peroxidase, domain 2 160 306 - -
Sed10g1835 327 FunFam Peroxidase 32 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1835 Sed-Chr10:35372213 Sed12g2380 Sed-Chr12:33687557 1.10E-89 dispersed
Sed10g1834 Sed-Chr10:35367093 Sed10g1835 Sed-Chr10:35372213 1.50E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1835 K00430 - csv:101202985 507.679